Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering, and link prediction.
☆29Mar 16, 2026Updated this week
Alternatives and similar repositories for RNA-KG
Users that are interested in RNA-KG are comparing it to the libraries listed below
Sorting:
- 🪝 What's the latest version for each database?☆28Updated this week
- A curated list of biomedical knowledge graphs and of resources for their construction.☆74Oct 17, 2024Updated last year
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Mar 19, 2024Updated 2 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆200May 3, 2024Updated last year
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆71Nov 7, 2025Updated 4 months ago
- A stitching platform for InXight☆15Mar 28, 2025Updated 11 months ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆33Aug 1, 2023Updated 2 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆139Feb 5, 2026Updated last month
- Build PharMeBINet from different sources.☆20Jan 15, 2026Updated 2 months ago
- ☆15Dec 8, 2025Updated 3 months ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- A Modular Framework for Learning on Multimodal Biomedical Knowledge Graphs☆18Jan 12, 2024Updated 2 years ago
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆44Jan 8, 2026Updated 2 months ago
- ☆19Jun 14, 2024Updated last year
- Send your latest Instagram posts to your Telegram channel with instagrapi and a Telegram bot.☆20May 23, 2023Updated 2 years ago
- A knowledge extraction tool that uses a large language model to extract semantic information from text☆29Jan 3, 2023Updated 3 years ago
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- An R package for the spatial analysis of population genetic data.☆20Feb 16, 2026Updated last month
- code for Gogleva et al manuscript☆46Nov 30, 2022Updated 3 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Aug 21, 2024Updated last year
- The Clinical Trials Knowledge Graph☆67Mar 9, 2023Updated 3 years ago
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials☆21Oct 19, 2019Updated 6 years ago
- R tool to analyse and integrate multiple -omics data☆15Jan 4, 2026Updated 2 months ago
- Data Ingestion Pipeline for Monarch☆57Nov 23, 2022Updated 3 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆30Mar 11, 2023Updated 3 years ago
- Flexible analysis of high-content CRISPR screening☆32Mar 6, 2026Updated 2 weeks ago
- Graph Echo State Networks for Pytorch☆24Jun 27, 2023Updated 2 years ago
- ErtlFunctionalGroupsFinder for CDK☆18Dec 18, 2023Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 6 years ago
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆26Mar 13, 2026Updated last week
- Read RDS files, in Python☆27Updated this week
- Graph Neural Networks with Multiple Prior Knowledge for Multi-Omics Data Analysis☆11May 1, 2023Updated 2 years ago
- Structure-informed machine learning for kinase modeling☆62Updated this week
- Single cell typing based on cell ontology☆54Dec 10, 2023Updated 2 years ago
- ☆58Nov 15, 2020Updated 5 years ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆33Mar 13, 2025Updated last year
- Services and guidelines for normalizing drug and other therapy terms☆13Feb 26, 2026Updated 3 weeks ago
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆11Feb 4, 2026Updated last month
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Mar 26, 2024Updated last year