AnacletoLAB / RNA-KGLinks
Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering, and link prediction.
☆27Updated 4 months ago
Alternatives and similar repositories for RNA-KG
Users that are interested in RNA-KG are comparing it to the libraries listed below
Sorting:
- 🪝 What's the latest version for each database?☆28Updated this week
- Build PharMeBINet from different sources.☆20Updated 3 weeks ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated 2 weeks ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆29Updated 2 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 4 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 2 months ago
- code for Gogleva et al manuscript☆46Updated 3 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆31Updated 10 months ago
- PyBioPAX: A python implementation of the BioPAX object model☆25Updated last year
- A stitching platform for InXight☆15Updated 9 months ago
- ☆18Updated last year
- ☆20Updated 5 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated last week
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆33Updated 8 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated last month
- Project code for BioHackathon Europe 2023.☆18Updated last year
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆20Updated 6 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆42Updated this week
- Ontology cross-reference and mapping service☆20Updated last month
- ☆32Updated 2 years ago
- A resource of adverse drug effects extracted from FDA structured product labels☆89Updated 6 months ago
- An automated workflow to create disease-specific Knowledge Graphs☆18Updated 4 months ago
- Python client for the Open Targets REST API at targetvalidation.org☆25Updated 4 months ago
- Network-based project to explore gene connectivity through biological scales☆23Updated last year
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆29Updated 11 months ago
- ☆26Updated last year
- ☆11Updated 5 years ago