AnacletoLAB / RNA-KGLinks
Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering, and link prediction.
☆25Updated 3 weeks ago
Alternatives and similar repositories for RNA-KG
Users that are interested in RNA-KG are comparing it to the libraries listed below
Sorting:
- 🪝 What's the latest version for each database?☆27Updated last week
- Build PharMeBINet from different sources.☆19Updated this week
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Updated last year
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 4 months ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated 2 weeks ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆28Updated 2 years ago
- code for Gogleva et al manuscript☆46Updated 2 years ago
- A stitching platform for InXight☆15Updated 6 months ago
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated last year
- ☆18Updated last year
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆31Updated 6 months ago
- ☆19Updated 5 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆60Updated last week
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 8 years ago
- A resource of adverse drug effects extracted from FDA structured product labels☆83Updated 3 months ago
- ☆25Updated last year
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆19Updated 6 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- ☆11Updated 5 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 11 months ago
- ☆24Updated 4 years ago
- ☆22Updated 2 years ago
- Connect the dots in networks.☆20Updated 5 years ago
- A Standard Database for Drug Repositioning☆19Updated 8 years ago
- Vaccine Ontology☆17Updated last month
- Python client for the Open Targets REST API at targetvalidation.org☆25Updated last month
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆25Updated last year
- Benchmarking gene embeddings on single, paired, and gene set tasks☆15Updated 2 months ago