Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering, and link prediction.
β29Aug 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for RNA-KG
Users that are interested in RNA-KG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.β15Updated this week
- πͺ What's the latest version for each database?β31Updated this week
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Modelsβ207May 3, 2024Updated 2 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.β79Jun 3, 2026Updated 2 months ago
- MeSH Enrichment and Semantic analysesβ13Jun 30, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Basic completions provider using Langchain and OpenAI like APIs for Spyder 6+β13Jul 6, 2026Updated last month
- Build PharMeBINet from different sources.β22Jul 14, 2026Updated last month
- A stitching platform for InXightβ15Jun 12, 2026Updated 2 months ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network β¦β35Aug 1, 2023Updated 3 years ago
- β26Updated this week
- A modern multimodal knowledge graph with type-specific metadata across biomedical domains.β126Updated this week
- β20Jun 14, 2024Updated 2 years ago
- PyBioPAX: A python implementation of the BioPAX object modelβ27May 10, 2024Updated 2 years ago
- Structure Generator based on R-Group (SGRG)β11Sep 28, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A curated list of biomedical knowledge graphs and of resources for their construction.β76Oct 17, 2024Updated last year
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.β28Aug 21, 2024Updated 2 years ago
- NP-KG: Knowledge Graph Framework for Natural Product-Drug Interactionsβ20Jun 25, 2024Updated 2 years ago
- code for Gogleva et al manuscriptβ47Nov 30, 2022Updated 3 years ago
- R tool to analyse and integrate multiple -omics dataβ16Jan 4, 2026Updated 7 months ago
- Wrapper for multiple AI coders (goose, claude code, codex)β22Dec 15, 2025Updated 8 months ago
- Similarity search in heterogeneous knowledge graphs using meta paths.β30Mar 11, 2023Updated 3 years ago
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trialsβ22Oct 19, 2019Updated 6 years ago
- π Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.β44Jan 8, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Flexible analysis of high-content CRISPR screeningβ33Mar 6, 2026Updated 5 months ago
- Data Ingestion Pipeline for Monarchβ57Nov 23, 2022Updated 3 years ago
- Summary Dashboard for Open Biological and Biomedical Ontologiesβ24Jun 8, 2026Updated 2 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Pythonβ21Sep 20, 2023Updated 2 years ago
- ErtlFunctionalGroupsFinder for CDKβ20Dec 18, 2023Updated 2 years ago
- FlashRNA - An Efficient Model for Regulatory Genomicsβ18Oct 15, 2025Updated 10 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"β16Apr 22, 2019Updated 7 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variantβ¦β16Apr 15, 2026Updated 4 months ago
- Structure-informed machine learning for kinase modelingβ60Updated this week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A motley crew of agents developed by the Monarch Initiativeβ26Nov 17, 2025Updated 9 months ago
- Enumerating biosynthetic pathways in metabolic networksβ13Feb 5, 2025Updated last year
- β59Nov 15, 2020Updated 5 years ago
- PlaNet: Predicting population response to drugs via clinical knowledge graphβ32Mar 13, 2025Updated last year
- Python toolkit for SSSOM mapping formatβ64Updated this week
- Python 3 runtime libraries for ANTLR 4β13Jun 7, 2015Updated 11 years ago
- β10Jan 19, 2019Updated 7 years ago