This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but should work with many more image data files thanks to BioFormats.
☆12May 21, 2021Updated 4 years ago
Alternatives and similar repositories for BioFormatsRead
Users that are interested in BioFormatsRead are comparing it to the libraries listed below
Sorting:
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Oct 15, 2025Updated 5 months ago
- PyFRAP: A Python based FRAP analysis tool box☆17Feb 1, 2026Updated last month
- Perform image registration of 2D and 3D volumes using state-of-the-art deformable registration.☆23Jul 15, 2019Updated 6 years ago
- ☆10Oct 26, 2022Updated 3 years ago
- Generate, merge, and visualize h5 files☆11Jul 19, 2025Updated 8 months ago
- Low-rank Highway Networks☆13Mar 11, 2016Updated 10 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Read and write life sciences file formats☆142Jun 12, 2025Updated 9 months ago
- Functional image processing☆14May 31, 2024Updated last year
- Code used to generate results in vandermeerlab papers☆10Mar 7, 2022Updated 4 years ago
- A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.☆12Apr 9, 2022Updated 3 years ago
- ☆24Aug 27, 2020Updated 5 years ago
- Python port of WaveClus☆14Jan 17, 2017Updated 9 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- ☆12Jun 24, 2024Updated last year
- Alfred Workflow to work with templates and the bear macOS app☆25Jan 22, 2026Updated 2 months ago
- ☆11May 16, 2023Updated 2 years ago
- A two-hour introduction to data for Python *or* R.☆10Apr 24, 2022Updated 3 years ago
- UHCA☆11Jan 23, 2025Updated last year
- ☆15Jan 9, 2025Updated last year
- Cellular Mitochondrial Analysis☆14Oct 25, 2021Updated 4 years ago
- Some scikit-learn-esque wrappers for statsmodels GLM☆23Jul 26, 2013Updated 12 years ago
- Learn how to create and deploy an ESP high availability system using Kafka as the message broker.☆10Feb 20, 2020Updated 6 years ago
- Untangle your unix pipeline one-liners☆22Nov 30, 2015Updated 10 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- Official implementation: Population Aware Diffusion for Time Series Generation (AAAI-25)☆15Sep 1, 2025Updated 6 months ago
- Image stitching☆12Dec 23, 2018Updated 7 years ago
- ☆15May 21, 2018Updated 7 years ago
- The NeuroElectro Project: Compiling information on neuron electrophysiology through literature text-mining.☆19Dec 7, 2024Updated last year
- For those thoughts you want to reflect on alone, lay back on the chaise and relax.☆47May 22, 2020Updated 5 years ago
- Smoothing while preserving edges and coherent structures in images with anisotropic diffusion using lattice basis reduction☆10Nov 12, 2025Updated 4 months ago
- Contact angle image processing analysis☆28Jun 6, 2021Updated 4 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- ☆14Sep 6, 2019Updated 6 years ago
- Easy two-way databinding with Blaze☆12Aug 7, 2017Updated 8 years ago
- A Deep Learning project that uses Diffusion transformers (DiT) to generate Grand Theft Auto V driving footage☆16Dec 31, 2024Updated last year
- Boilerplate Django REST and Angular app with jwt login☆14Jan 7, 2023Updated 3 years ago
- Anatomy and Physiology Textbook (Openstax)☆11Aug 3, 2018Updated 7 years ago
- Loris docker image suitable for development environments☆16Sep 15, 2023Updated 2 years ago