Alternatives and similar repositories for BioFormatsRead:

Users that are interested in BioFormatsRead are comparing it to the libraries listed below

• AllenCellModeling / czifile
  czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
  ☆15Updated 6 years ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆60Updated 3 years ago
• IDR / idr-metadata
  Curated metadata for all studies published in the Image Data Resource
  ☆16Updated last month
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆136Updated 6 months ago
• IDR / idr-notebooks
  Jupyter Notebooks for the Image Data Resource
  ☆18Updated 2 years ago
• Jhsmit / PymageJ
  Python tools for ImageJ
  ☆13Updated 3 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated this week
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆27Updated 2 months ago
• ilastik / tiktorch
  Tiktorch
  ☆12Updated this week
• soft-matter / pims_nd2
  Python nd2 reader based on the ND2 SDK
  ☆16Updated 3 years ago
• mehta-lab / microDL
  3D virtual staining with 2D and 2.5D U-Nets
  ☆29Updated last year
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆26Updated 10 months ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• ome / docker-example-omero
  OMERO Docker compose example
  ☆24Updated last year
• samocooper / nuclitrack
  A python developed graphical user interface for tracking cell nuclei
  ☆9Updated 7 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated this week
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 3 years ago
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆43Updated 9 months ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆63Updated 2 months ago
• bioimage-io / bioimage-io-resources
  Model repository for bioimage.io
  ☆17Updated last year
• bigdataprocessor / bigdataprocessor2
  ☆20Updated 2 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆132Updated this week
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆53Updated 4 years ago
• BICCN / cell-locator
  manually align specimens to annotated 3D spaces
  ☆19Updated last year
• filippocastelli / pyometiff
  OME-TIFF IO in python
  ☆20Updated 2 weeks ago
• AllenCellModeling / aicspylibczi
  Python module utilizing libCZI for reading Zeiss CZI files.
  ☆37Updated 2 months ago
• piximi / application_archived
  A web application for classifying objects
  ☆29Updated 3 years ago
• multiFISH / EASI-FISH
  Tools and scripts for EASI-FISH image data analysis
  ☆17Updated 2 years ago