Alternatives and similar repositories for BioFormatsRead

Users that are interested in BioFormatsRead are comparing it to the libraries listed below

• AllenCellModeling / czifile
  czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
  ☆15Updated 3 months ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 4 years ago
• ome / docker-example-omero
  OMERO Docker compose example
  ☆29Updated 2 months ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆114Updated 3 years ago
• mehta-lab / microDL
  3D virtual staining with 2D and 2.5D U-Nets
  ☆31Updated 2 years ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆59Updated 4 years ago
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆142Updated 7 months ago
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated 3 months ago
• piximi / application_archived
  A web application for classifying objects
  ☆29Updated 4 years ago
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 6 years ago
• IDR / idr-metadata
  Curated metadata for all studies published in the Image Data Resource
  ☆16Updated 6 months ago
• IDR / idr-notebooks
  Jupyter Notebooks for the Image Data Resource
  ☆19Updated 2 months ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆34Updated 3 years ago
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆91Updated 3 years ago
• AllenCellModeling / torch_integrated_cell
  ☆46Updated 3 months ago
• sgmiriuka / PSC_differentiation
  Applying deep learning for very early recognition of pluripotent stem cell differentiation
  ☆11Updated 6 years ago
• Jhsmit / PymageJ
  Python tools for ImageJ
  ☆13Updated 4 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆72Updated 3 weeks ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆33Updated 10 months ago
• CellProfiler / CellProfiler-Analyst
  Open-source software for exploring and analyzing large, high-dimensional image-derived data.
  ☆166Updated 6 months ago
• imjoy-team / ImJoy
  ImJoy: Deep Learning Made Easy!
  ☆190Updated 2 years ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 4 years ago
• glencoesoftware / webinar-notebooks
  Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar
  ☆13Updated 2 years ago
• CellProfiler / notebooks
  Jupyter notebooks for CellProfiler and friends
  ☆14Updated 7 years ago
• juglab / VoidSeg
  Notebooks for VoidSeg
  ☆17Updated 5 years ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆55Updated 5 years ago
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆28Updated last year
• theislab / deepflow
  This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
  ☆33Updated 7 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆42Updated 4 years ago