scPretrain: Multi-task self-supervised learning for cell type classification
☆24Dec 24, 2021Updated 4 years ago
Alternatives and similar repositories for scPretrain
Users that are interested in scPretrain are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jul 22, 2020Updated 6 years ago
- code repo for Set2Gaussian☆17Jun 19, 2020Updated 6 years ago
- Single cell typing based on cell ontology☆55Dec 10, 2023Updated 2 years ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year
- ☆13Feb 24, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- ☆37Mar 21, 2025Updated last year
- Guided Auto Encoder☆17Jul 27, 2017Updated 9 years ago
- Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction☆20Oct 20, 2023Updated 2 years ago
- TCGA Benchmark Tasks for Clinical Attribute Prediction based on Genome☆14Mar 16, 2021Updated 5 years ago
- ☆12Aug 21, 2025Updated 11 months ago
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Nov 21, 2023Updated 2 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago
- ☆36Jun 4, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆17Mar 2, 2026Updated 4 months ago
- Gene expression time-series extrapolation for heterogeneous data☆20Apr 29, 2023Updated 3 years ago
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- Learning with uncertainty for biological discovery and design☆34Mar 24, 2023Updated 3 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- Paper collection for single cell foundation models☆41Mar 17, 2024Updated 2 years ago
- Feature selection for deep learning models.☆15Jan 9, 2021Updated 5 years ago
- KDS software for Kinase Drug Selectivity☆10Jun 22, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Simultaneous deep generative modeling and clustering of single cell genomic data☆33Nov 14, 2022Updated 3 years ago
- The Expanded Package for IET Solvation☆13Feb 6, 2025Updated last year
- A visible neural network model for drug response prediction☆157Sep 13, 2023Updated 2 years ago
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 5 years ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- Deep learning to solve RNA design puzzles☆20Feb 4, 2025Updated last year
- TIDDIT - structural variant calling☆10Dec 8, 2025Updated 7 months ago
- ☆11Oct 28, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jun 21, 2015Updated 11 years ago
- ☆10Jun 29, 2021Updated 5 years ago
- ☆11Sep 2, 2024Updated last year
- SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data☆12Apr 8, 2026Updated 3 months ago
- scID☆14Oct 21, 2021Updated 4 years ago
- ☆38Oct 16, 2023Updated 2 years ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆25Jan 26, 2024Updated 2 years ago