☆29Dec 2, 2022Updated 3 years ago
Alternatives and similar repositories for CliqueSNV
Users that are interested in CliqueSNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification☆15Sep 27, 2023Updated 3 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 6 months ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 11 months ago
- ☆32Sep 21, 2023Updated 3 years ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆13Sep 9, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast viral consensus genome reconstruction☆27Sep 16, 2026Updated 3 weeks ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- Add biological annotations to variants in a given VCF file.☆33Apr 4, 2026Updated 6 months ago
- V-pipe is a pipeline designed for analysing NGS data of short viral genomes☆147Aug 2, 2026Updated 2 months ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated 2 years ago
- Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction).☆20May 3, 2017Updated 9 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆42Updated this week
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆42Feb 24, 2023Updated 3 years ago
- ☆23Sep 22, 2026Updated 3 weeks ago
- Lightweight package for airport data and convenience tools to do common airport-data related tasks☆11Nov 11, 2025Updated 11 months ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆17May 14, 2021Updated 5 years ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- ☆13Aug 20, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SC2 variant detection and composition pipeline☆19Jun 12, 2026Updated 4 months ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 4 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- ☆13Jul 21, 2025Updated last year
- Viroid-like circRNA discovery and analysis suite☆20Nov 11, 2023Updated 2 years ago
- This repository contains the source code for the tappAS application. See README for details.☆22Jun 23, 2026Updated 3 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 5 years ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- A web-based interactive 3D molecular viewer with Augmented Reality & Holographic Display.☆12May 9, 2019Updated 7 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 8 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 7 years ago
- Depth-weighted De-Mixing☆134Oct 7, 2026Updated last week
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Multi-sample cancer phylogeny reconstruction☆35Oct 19, 2017Updated 8 years ago