Alternatives and similar repositories for voc-identify

Users that are interested in voc-identify are comparing it to the libraries listed below

• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated last month
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 7 years ago
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated 9 months ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated last month
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated 10 months ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated 2 years ago
• chrisruis / bammix
  Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures
  ☆13Updated 3 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆22Updated 8 years ago
• gtonkinhill / pairsnp
  A set of scripts for calculating pairwise SNP distance
  ☆42Updated 2 years ago
• emvolz-phylodynamics / treestructure
  ☆18Updated last month
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 5 years ago
• cchauve / HyAsP
  Hybrid Assembler for Plasmids
  ☆10Updated 3 years ago
• phac-nml / neptune
  Neptune: Genomic Signature Discovery
  ☆20Updated 9 months ago
• tatumdmortimer / core-genome-alignment
  Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.
  ☆19Updated 7 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last month
• thomasp85 / PanViz
  D3 based visualisation for comparative genomics
  ☆14Updated 8 years ago
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• c2-d2 / disty
  Disty McMatrixface - compute a distance matrix from a core genome alignment file
  ☆14Updated 2 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 11 months ago
• dhelekal / CaveDive
  ☆17Updated last year
• chienchi / amplicon_coverage_plot
  interactive barplot for amplicon sequencing
  ☆14Updated 8 months ago
• h3abionet / TADA
  TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
  ☆22Updated last week
• W-L / deviaTE
  Python tool for the analysis and visualization of mobile genetic elements
  ☆19Updated 3 months ago
• jgans / thermonucleotideBLAST
  Searching DNA/RNA sequence databases with PCR and/or probe queries
  ☆21Updated last year
• aewebb80 / VESPA
  VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
  ☆15Updated 3 years ago
• BU-ISCIII / SARS-Cov2_analysis
  Documentation for analyzing SARS-Cov2 samples.
  ☆11Updated 5 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆49Updated 2 years ago
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 2 months ago