dorbarker / voc-identifyLinks
Identify Variants of Concern from metagenomic samples of SARS-CoV-2
☆12Updated 4 years ago
Alternatives and similar repositories for voc-identify
Users that are interested in voc-identify are comparing it to the libraries listed below
Sorting:
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Read contamination removal☆25Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last week
- Neptune: Genomic Signature Discovery☆20Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- A set of scripts for calculating pairwise SNP distance☆43Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆16Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 2 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 2 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- ☆18Updated 2 months ago
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆23Updated last year
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- ☆18Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Variant call verification☆16Updated 6 months ago
- D3 based visualisation for comparative genomics☆14Updated 9 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Updated 5 years ago
- A Nextflow pipeline for running synteny analysis.☆16Updated 5 months ago
- Systematic ProtEin AnnotatoR☆19Updated 2 months ago