dorbarker / voc-identifyLinks
Identify Variants of Concern from metagenomic samples of SARS-CoV-2
☆12Updated 4 years ago
Alternatives and similar repositories for voc-identify
Users that are interested in voc-identify are comparing it to the libraries listed below
Sorting:
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆24Updated this week
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last month
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Neptune: Genomic Signature Discovery☆21Updated last year
- Create your own PanViz visualizations☆21Updated 8 years ago
- A set of scripts for calculating pairwise SNP distance☆44Updated 3 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Nanopore Real-Time Analysis Tool☆17Updated last year
- D3 based visualisation for comparative genomics☆14Updated 9 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Working with the outputs of sourmash in R☆28Updated 2 weeks ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Variant call verification☆16Updated 8 months ago
- ☆18Updated last year
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22Updated last month
- PanGenomePipeline☆16Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Scalable relaxed clock phylogenetic dating☆28Updated 4 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 weeks ago
- software to identify primers that can distinguish genomes☆20Updated last week
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- Systematic ProtEin AnnotatoR☆19Updated 4 months ago
- Read contamination removal☆25Updated 2 years ago