dorbarker / voc-identifyLinks
Identify Variants of Concern from metagenomic samples of SARS-CoV-2
☆12Updated 4 years ago
Alternatives and similar repositories for voc-identify
Users that are interested in voc-identify are comparing it to the libraries listed below
Sorting:
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Updated 3 years ago
- Read contamination removal☆25Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 11 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last month
- Influenza genome analysis Nextflow workflow☆23Updated last month
- Neptune: Genomic Signature Discovery☆20Updated 11 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- D3 based visualisation for comparative genomics☆14Updated 9 years ago
- A set of scripts for calculating pairwise SNP distance☆43Updated 2 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22Updated last week
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- ☆11Updated 4 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 8 months ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- An easy way of MLSTyping your genomes in R.☆18Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Create your own PanViz visualizations☆20Updated 7 years ago
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago
- Systematic ProtEin AnnotatoR☆19Updated last month
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆23Updated last year