dorbarker / voc-identifyLinks
Identify Variants of Concern from metagenomic samples of SARS-CoV-2
☆13Updated 3 years ago
Alternatives and similar repositories for voc-identify
Users that are interested in voc-identify are comparing it to the libraries listed below
Sorting:
- Modular snakemake workflow for assembly-based metagenomics☆10Updated 7 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated last week
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- A set of scripts for calculating pairwise SNP distance☆41Updated 2 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆31Updated last month
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- interactive barplot for amplicon sequencing☆14Updated 6 months ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- Tools for analyzing trees☆14Updated 2 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 6 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated last week
- ☆22Updated 2 years ago
- Fast alignment-free pangenome creation and exploration☆27Updated 5 years ago
- Estimating time trees from very large phylogenies☆26Updated 11 months ago
- Working with the outputs of sourmash in R☆27Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last month
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Updated 6 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- ☆11Updated 4 years ago
- ☆23Updated 5 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆11Updated 3 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated 2 months ago