dorbarker / voc-identify
Identify Variants of Concern from metagenomic samples of SARS-CoV-2
☆12Updated 3 years ago
Alternatives and similar repositories for voc-identify:
Users that are interested in voc-identify are comparing it to the libraries listed below
- Scalable relaxed clock phylogenetic dating☆24Updated 10 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆34Updated 2 weeks ago
- multi-tool QC for minion data☆10Updated 6 years ago
- Modular snakemake workflow for assembly-based metagenomics☆10Updated 7 years ago
- repo for 2016 EDAMAME tutorials☆11Updated 8 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last month
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆31Updated 7 months ago
- Microbiome Analysis Plotting and Visualization☆10Updated this week
- A message queue for genomic surveillance☆20Updated 3 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- ☆19Updated 7 months ago
- Tools for analyzing trees☆14Updated last year
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆27Updated last month
- ☆17Updated 8 months ago
- ☆13Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆29Updated this week
- Talk to the NCBI EUtils☆21Updated 4 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- A set of scripts for calculating pairwise SNP distance☆38Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆17Updated 4 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Quality control for phylogenetic analyses☆13Updated 3 months ago
- interactive barplot for amplicon sequencing☆13Updated last month
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- SARs-CoV-2 Primer schemes☆15Updated last year