Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification
☆15Sep 27, 2023Updated 2 years ago
Alternatives and similar repositories for wastewater_analysis
Users that are interested in wastewater_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SARS-CoV-2 (Va)riant (Qu)antification in s(E)wage, designed for (Ro)bustness☆13Oct 10, 2025Updated 6 months ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 3 years ago
- ☆19Nov 24, 2025Updated 5 months ago
- Depth-weighted De-Mixing☆132Updated this week
- ☆25Dec 2, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Assembly of Nanopore Sequencing☆17Apr 14, 2026Updated 3 weeks ago
- TN93 fast distance calculator☆20Jul 16, 2025Updated 9 months ago
- Daily analyses of genomic SARS-CoV-2 data☆15Nov 8, 2022Updated 3 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 6 months ago
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 5 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Detection of phage RBPs based on protein domains and machine learning☆32Feb 5, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- RSV-A lineage definitions and proposals☆14Nov 9, 2025Updated 5 months ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 5 months ago
- SC2 variant detection and composition pipeline☆19Jul 14, 2023Updated 2 years ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆13Sep 9, 2021Updated 4 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated last year
- Biological file format specimens for testing packages, and functions to assist in testing.☆15Nov 18, 2025Updated 5 months ago
- Opinionated viral metagenomics workflow☆13Apr 22, 2026Updated 2 weeks ago
- ☆12Jul 21, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Updated this week
- Repository for source code of the Data Structures online textbook (Niema Moshiri and Liz Izhikevich, 2016)☆12Jan 28, 2019Updated 7 years ago
- ViReport analysis of COVID-19 using GISAID data☆20Sep 20, 2020Updated 5 years ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- SeqSero2☆40Oct 1, 2025Updated 7 months ago
- community detection in multiplex networks☆10Apr 23, 2016Updated 10 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Sep 3, 2020Updated 5 years ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18Feb 3, 2026Updated 3 months ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 3 months ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago