Alternatives and similar repositories for wastewater_analysis:

Users that are interested in wastewater_analysis are comparing it to the libraries listed below

• kelwyres / Bactabolize
  ☆38Updated 2 weeks ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆29Updated 9 months ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆93Updated 7 months ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆26Updated 2 weeks ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆37Updated 2 weeks ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated last week
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆44Updated 4 months ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆47Updated 3 months ago
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆56Updated 2 months ago
• rrwick / Verticall
  Recombination-free trees
  ☆58Updated last month
• theiagen / public_health_bacterial_genomics
  ☆26Updated last year
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated last year
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆40Updated last week
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆41Updated last year
• boulund / phaster_scripts
  Small utility script to submit genomes to PHASTER for phage detection
  ☆24Updated 3 years ago
• Morteza-M-Saber / BacGWASim
  A Simulator for Bacterial Machine learning and Genome-Wide Association Studies
  ☆23Updated 3 years ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆40Updated 5 months ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆51Updated 3 years ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆21Updated last year
• vinisalazar / metaphor
  Metaphor: a general-purpose workflow for assembly and binning of metagenomes
  ☆39Updated 5 months ago
• kussell-lab / mcorr
  Inferring bacterial recombination rates from large-scale sequencing datasets.
  ☆42Updated 2 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆23Updated last year
• virus-evolution / gofasta
  ☆35Updated 2 weeks ago
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆74Updated 4 months ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆35Updated last year
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆60Updated 2 months ago
• CFSAN-Biostatistics / C-WAP
  SC2 variant detection and composition pipeline
  ☆17Updated last year
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆40Updated 6 months ago