Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification
☆15Sep 27, 2023Updated 2 years ago
Alternatives and similar repositories for wastewater_analysis
Users that are interested in wastewater_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SARS-CoV-2 (Va)riant (Qu)antification in s(E)wage, designed for (Ro)bustness☆13Oct 10, 2025Updated 10 months ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 3 years ago
- Depth-weighted De-Mixing☆134Updated this week
- ☆27Dec 2, 2022Updated 3 years ago
- QC cutoffs for different genomes.☆17May 28, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated 2 months ago
- Detection of phage RBPs based on protein domains and machine learning☆34Feb 5, 2025Updated last year
- TN93 fast distance calculator☆21May 10, 2026Updated 3 months ago
- ☆21Aug 5, 2026Updated last week
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 9 months ago
- Daily analyses of genomic SARS-CoV-2 data☆15Nov 8, 2022Updated 3 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 8 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆13Sep 9, 2021Updated 4 years ago
- SC2 variant detection and composition pipeline☆19Jun 12, 2026Updated 2 months ago
- An easy to use Julia framework for agent based modeling.☆13Dec 22, 2023Updated 2 years ago
- Scripts and reference files to type Group A Streptococcus☆11Apr 1, 2026Updated 4 months ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- ViReport analysis of COVID-19 using GISAID data☆20Sep 20, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Biological file format specimens for testing packages, and functions to assist in testing.☆16Nov 18, 2025Updated 9 months ago
- ☆12Jul 21, 2025Updated last year
- SeqSero2☆41Oct 1, 2025Updated 10 months ago
- community detection in multiplex networks☆10Apr 23, 2016Updated 10 years ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 7 months ago
- ☆13Jan 8, 2020Updated 6 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 8 months ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated 4 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Jul 3, 2026Updated last month