CFSAN-Biostatistics / C-WAP
SC2 variant detection and composition pipeline
☆16Updated last year
Alternatives and similar repositories for C-WAP:
Users that are interested in C-WAP are comparing it to the libraries listed below
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆26Updated last month
- UPHL's Reference Free Pipeline☆25Updated this week
- Code Safety Inspection Service☆20Updated 2 years ago
- whole genome MLST analysis☆40Updated 8 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆54Updated 4 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆41Updated 2 weeks ago
- Influenza data pipeline to automate genotyping assignment☆22Updated 2 months ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆87Updated this week
- ☆22Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆72Updated 4 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Recombination-free trees☆56Updated last year
- ☆35Updated 5 months ago
- CDCgov/mycosnp-nf☆42Updated 3 weeks ago
- Gene Absence Presence Identification tool.☆26Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆56Updated this week
- ☆44Updated this week
- Small utility script to submit genomes to PHASTER for phage detection☆23Updated 3 years ago
- SeqSero2☆33Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- ☆36Updated 2 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Updated 11 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆30Updated last month