cbg-ethz / shorah
Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)
☆40Updated last year
Alternatives and similar repositories for shorah:
Users that are interested in shorah are comparing it to the libraries listed below
- LoFreq Star: Sensitive variant calling from sequencing data☆102Updated 2 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆85Updated 2 months ago
- Visualize whole genome alignments as linear maps☆70Updated 4 months ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 7 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- Edinburgh Genomics MinION training 2016☆34Updated 8 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- ☆36Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated last month
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- PHAST☆71Updated last month
- de novo virus assembler of Illumina paired reads☆54Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago
- A fork of exonerate: a generic tool for sequence alignment☆64Updated last year
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆68Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- Long-read mock community experiments☆103Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 5 years ago