Generic human DNA variant annotation pipeline
☆60Feb 13, 2024Updated 2 years ago
Alternatives and similar repositories for gvanno
Users that are interested in gvanno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline creation tool using Snakemake☆13Updated this week
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 4 months ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 3 years ago
- VariantGrid public repo☆24Updated this week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.☆47Jun 26, 2020Updated 5 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆27Apr 11, 2026Updated last week
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆93Sep 16, 2025Updated 7 months ago
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated 6 months ago
- Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.☆12Jun 2, 2022Updated 3 years ago
- Fast interval intersection library☆44Aug 20, 2025Updated 7 months ago
- Personal Cancer Genome Reporter (PCGR)☆275Apr 1, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- VCF visualization interface☆178Updated this week
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆89Mar 27, 2026Updated 3 weeks ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Apr 1, 2026Updated 2 weeks ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 3 weeks ago
- Curated list of resources for variant prioritization☆14Nov 18, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 3 months ago
- ☆11Mar 23, 2026Updated 3 weeks ago
- Rare variant test software for next generation sequencing data☆141Jan 26, 2022Updated 4 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆43Sep 8, 2025Updated 7 months ago
- Sentieon DNAscope + Machine Learning Model☆12Mar 19, 2025Updated last year
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 3 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated last month
- ☆29Feb 17, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 5 months ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 4 years ago
- A modular annotation tool for genomic variants☆150Apr 6, 2026Updated last week
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 5 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆49May 27, 2025Updated 10 months ago