sigven / gvannoLinks
Generic human DNA variant annotation pipeline
☆58Updated last year
Alternatives and similar repositories for gvanno
Users that are interested in gvanno are comparing it to the libraries listed below
Sorting:
- Powerful statistics for VCF files☆70Updated last year
- Burden testing against public controls☆50Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- for visual evaluation of read support for structural variation☆54Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Structural variant merging tool☆52Updated 10 months ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated last year
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- TIDDIT - structural variant calling☆73Updated 2 months ago
- ☆39Updated last year
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- ☆35Updated 4 years ago
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 9 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last week
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆68Updated 3 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- PGxPOP☆17Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago