Alternatives and similar repositories for geneimpacts:

Users that are interested in geneimpacts are comparing it to the libraries listed below

• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 7 months ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 4 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 3 months ago
• rhshah / iCallSV
  A Framework to call Structural Variants from NGS based datasets
  ☆22Updated 7 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 2 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 9 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 6 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 6 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• lh3 / rtgeval
  Wrapper for RTG's vcfeval; DEPRECATED!
  ☆21Updated 8 years ago
• markrobinsonuzh / CrispRVariants
  ☆24Updated 4 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated this week
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated last month
• quinlan-lab / ccrhtml
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Updated 5 years ago
• Yandell-Lab / VVP-pub
  VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
  ☆19Updated 7 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 7 years ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 8 years ago
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 4 years ago
• databio / pararead
  Simplifies parallel processing of DNA sequencing reads
  ☆9Updated 5 months ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated last year
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• mtw / Bio-ViennaNGS
  A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
  ☆23Updated 6 years ago
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆28Updated 4 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago