prioritize effects of variant annotations from VEP, SnpEff, et al.
☆34Dec 10, 2024Updated last year
Alternatives and similar repositories for geneimpacts
Users that are interested in geneimpacts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- use the noise☆15Apr 15, 2020Updated 6 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 6 years ago
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Utilities to create and analyze gVCF files☆38Mar 21, 2017Updated 9 years ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Feb 9, 2026Updated 2 months ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆400Aug 30, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆148Feb 17, 2026Updated last month
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 10 months ago
- python stuff I use☆20Feb 16, 2026Updated last month
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 10 years ago
- genetic variant expressions, annotation, and filtering for great good.☆274Dec 15, 2025Updated 4 months ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Mar 30, 2026Updated 2 weeks ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆49May 27, 2025Updated 10 months ago
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 6 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Nov 27, 2025Updated 4 months ago
- Very simple, pure python, BAM file reader☆80Feb 20, 2019Updated 7 years ago
- Biopet docs☆17Aug 2, 2018Updated 7 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago