prioritize effects of variant annotations from VEP, SnpEff, et al.
☆34Dec 10, 2024Updated last year
Alternatives and similar repositories for geneimpacts
Users that are interested in geneimpacts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- use the noise☆15Apr 15, 2020Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50May 8, 2026Updated 2 months ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 7 years ago
- Utilities to create and analyze gVCF files☆38Mar 21, 2017Updated 9 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Read visualizer for structural variants☆85Aug 18, 2018Updated 7 years ago
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 6 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- a lightweight db framework for exploring genetic variation.☆328Apr 28, 2020Updated 6 years ago
- python access to UCSC genomes database☆138Aug 27, 2020Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jun 16, 2026Updated last month
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Feb 24, 2017Updated 9 years ago
- python stuff I use☆20Feb 16, 2026Updated 5 months ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆36Aug 13, 2020Updated 5 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆338May 27, 2025Updated last year
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 12 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 11 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆151Feb 17, 2026Updated 5 months ago
- genetic variant expressions, annotation, and filtering for great good.☆276May 12, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆50May 27, 2025Updated last year
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Nov 27, 2025Updated 7 months ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆14Feb 2, 2022Updated 4 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago