cc2qe / vawk
An awk-like VCF parser
☆54Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for vawk
- ☆78Updated 10 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Structural Variant Index☆70Updated this week
- R package for inferring copy number from read depth☆31Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- Read visualizer for structural variants☆81Updated 6 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 4 years ago
- ☆36Updated 6 months ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 8 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆101Updated 3 years ago
- Genomic Association Tester☆29Updated last year
- Maximum likelihood demultiplexing☆46Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- R package designed to simplify structural variant analysis☆70Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆51Updated 7 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- A software for calculating telomere length☆67Updated 6 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- CNV screening and annotation tool☆24Updated 8 years ago
- QDNAseq package for Bioconductor☆48Updated 3 months ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago