genome-in-a-bottle / giab_tools_methods
This repository contains a list of tools or methods that have been used in GIAB analysis
☆28Updated 5 years ago
Alternatives and similar repositories for giab_tools_methods
Users that are interested in giab_tools_methods are comparing it to the libraries listed below
Sorting:
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- full taxonomer cython repository☆22Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- profile basd Illumina pair-end Reads Simulator☆27Updated last year
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆39Updated 7 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- ☆51Updated 5 years ago
- Adapters for trimming☆30Updated 6 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago