genome-in-a-bottle / giab_tools_methodsView external linksLinks
This repository contains a list of tools or methods that have been used in GIAB analysis
☆29Nov 15, 2019Updated 6 years ago
Alternatives and similar repositories for giab_tools_methods
Users that are interested in giab_tools_methods are comparing it to the libraries listed below
Sorting:
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 10 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 6 years ago
- Simple matching of HTS samples based on HLA typing☆13Jan 4, 2017Updated 9 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆263Nov 30, 2023Updated 2 years ago
- Smart VCF parser DSL☆83May 24, 2022Updated 3 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Nov 2, 2015Updated 10 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 9 years ago
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 7 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- Scripts + data to recreate analyses published on http://benjaminlmoore.wordpress.com and http://blm.io☆33Nov 3, 2015Updated 10 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated 6 months ago
- For original Nature Biotechnology Publication (Q1 2012)☆26Jul 9, 2017Updated 8 years ago
- RNAseq analysis pipeline☆27Updated this week
- Build and test new apps for the KBase platform☆28Feb 25, 2025Updated 11 months ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 8 years ago
- Visualise interstrain recombination from environmental samples.☆26Apr 18, 2019Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Jul 19, 2017Updated 8 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 7 years ago
- ☆16May 7, 2023Updated 2 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Apr 9, 2023Updated 2 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- Training and using TFFM/PSSM/4-bits + DNA shape classifiers☆13Jun 11, 2018Updated 7 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Nov 29, 2022Updated 3 years ago
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- a lightweight db framework for exploring genetic variation.☆324Apr 28, 2020Updated 5 years ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 6 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 6 years ago