This repository contains a list of tools or methods that have been used in GIAB analysis
☆28Nov 15, 2019Updated 6 years ago
Alternatives and similar repositories for giab_tools_methods
Users that are interested in giab_tools_methods are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 11 years ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆272Nov 30, 2023Updated 2 years ago
- Scripts + data to recreate analyses published on http://benjaminlmoore.wordpress.com and http://blm.io☆33Nov 3, 2015Updated 10 years ago
- Smart VCF parser DSL☆84May 24, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 7 years ago
- Training and using TFFM/PSSM/4-bits + DNA shape classifiers☆13Jun 11, 2018Updated 8 years ago
- Aligner for sequencing data☆18Apr 20, 2026Updated 5 months ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 8 years ago
- Biopet docs☆17Aug 2, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Analysis of Cancer Genomes; 2017 edition☆16Jan 21, 2018Updated 8 years ago
- Aligner for sequencing data☆21Apr 20, 2026Updated 5 months ago
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated last year
- This repository contains information about latest release from Genome in a Bottle project☆75Aug 30, 2019Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆93Oct 3, 2024Updated last year
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆55Oct 12, 2023Updated 2 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Jul 19, 2017Updated 9 years ago
- An introduction about the Genome-in-a-Bottle project☆26Aug 30, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- MaxQuant Automated Pipeline☆24Jun 13, 2020Updated 6 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 9 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- C++ Library to parse Illumina InterOp files☆85Apr 20, 2026Updated 5 months ago
- This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository…☆51Jun 1, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- QBRC Somatic Mutation Calling Pipeline☆16Feb 8, 2022Updated 4 years ago
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 6 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 10 years ago
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆12Updated this week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- Overlapping Reads COmpression with Minimizers☆16May 19, 2022Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 9 years ago