epam / NGBLinks
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
☆166Updated 5 months ago
Alternatives and similar repositories for NGB
Users that are interested in NGB are comparing it to the libraries listed below
Sorting:
- VarDict Java port☆137Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 3 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 3 months ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆163Updated 3 weeks ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated last month
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 6 months ago
- C++ Library to parse Illumina InterOp files☆80Updated 3 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- MyVariant.info: A BioThings API for human variant annotations☆96Updated 4 months ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- ☆187Updated 2 years ago
- ☆82Updated 7 years ago
- The nimble & robust variant annotator☆188Updated last year
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆144Updated 7 years ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆175Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆208Updated 4 years ago
- All source code of the crispor.org website☆84Updated 2 weeks ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆128Updated 5 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆64Updated 3 weeks ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- HTML5 scrollable genome browser☆111Updated 2 years ago