brentp / vcfannoLinks
annotate a VCF with other VCFs/BEDs/tabixed files
☆379Updated last month
Alternatives and similar repositories for vcfanno
Users that are interested in vcfanno are comparing it to the libraries listed below
Sorting:
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆320Updated 2 months ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆256Updated last year
- A flexible framework for rapid genome analysis and interpretation☆318Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆269Updated 2 months ago
- VarDict☆198Updated last year
- BEDOPS: high-performance genomic feature operations☆345Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 9 months ago
- Annotation and Ranking of Structural Variation☆262Updated 3 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆255Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆161Updated 2 years ago
- ☆281Updated 5 months ago
- A tool for estimating repeat sizes☆195Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆225Updated 3 years ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆252Updated last year
- Bayesian haplotype-based mutation calling☆314Updated last week
- C++ API & command-line toolkit for working with BAM data☆427Updated 2 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆333Updated 3 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆234Updated 3 years ago
- basic walk-throughs for alignment and variant calling from NGS sequencing data☆216Updated 6 months ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆211Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆237Updated 3 weeks ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago
- Tools for working with genomic and high throughput sequencing data.☆338Updated last week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆478Updated last week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆245Updated last week