annotate a VCF with other VCFs/BEDs/tabixed files
☆407May 1, 2026Updated last month
Alternatives and similar repositories for vcfanno
Users that are interested in vcfanno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cython + htslib == fast VCF and BCF processing☆445May 14, 2026Updated last month
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 8 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated last year
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆150Feb 17, 2026Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tool set for short variant discovery in genetic sequence data.☆206May 4, 2021Updated 5 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated last year
- genetic variant expressions, annotation, and filtering for great good.☆275May 12, 2026Updated last month
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- a lightweight db framework for exploring genetic variation.☆329Apr 28, 2020Updated 6 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆858May 2, 2026Updated last month
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆320Apr 24, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Toolset for SV simulation, comparison and filtering☆420Dec 1, 2023Updated 2 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆522Jun 9, 2026Updated last week
- Structural variant toolkit for VCFs☆414May 22, 2026Updated 3 weeks ago
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 2 months ago
- Haplotype VCF comparison tools☆469Dec 7, 2023Updated 2 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Structural variation and indel detection by local assembly☆256Jun 7, 2026Updated last week
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆680Mar 20, 2026Updated 2 months ago
- Interval data structure☆236Mar 18, 2026Updated 2 months ago
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- Bayesian haplotype-based mutation calling☆324Feb 13, 2026Updated 4 months ago
- Personal Cancer Genome Reporter (PCGR)☆279Jun 9, 2026Updated last week
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Smart VCF parser DSL☆83May 24, 2022Updated 4 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- nim wrapper for htslib for parsing genomics data files☆158May 2, 2026Updated last month
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆559Updated this week
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Java utilities for Bioinformatics☆523May 7, 2026Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 9 months ago