annotate a VCF with other VCFs/BEDs/tabixed files
☆401Aug 30, 2025Updated 8 months ago
Alternatives and similar repositories for vcfanno
Users that are interested in vcfanno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cython + htslib == fast VCF and BCF processing☆440Feb 23, 2026Updated 2 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 7 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆149Feb 17, 2026Updated 2 months ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A tool set for short variant discovery in genetic sequence data.☆205May 4, 2021Updated 5 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated 11 months ago
- genetic variant expressions, annotation, and filtering for great good.☆272Updated this week
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆847Apr 24, 2026Updated last week
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆313Apr 24, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Toolset for SV simulation, comparison and filtering☆416Dec 1, 2023Updated 2 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 2 months ago
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆514Feb 26, 2026Updated 2 months ago
- Structural variant toolkit for VCFs☆407Mar 21, 2026Updated last month
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 3 weeks ago
- Haplotype VCF comparison tools☆465Dec 7, 2023Updated 2 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Structural variation and indel detection by local assembly☆255Updated this week
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆676Mar 20, 2026Updated last month
- Interval data structure☆236Mar 18, 2026Updated last month
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 2 months ago
- Personal Cancer Genome Reporter (PCGR)☆276Apr 29, 2026Updated last week
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Smart VCF parser DSL☆83May 24, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- nim wrapper for htslib for parsing genomics data files☆158Updated this week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆546Apr 13, 2026Updated 3 weeks ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Java utilities for Bioinformatics☆521Mar 25, 2026Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 8 months ago