annotate a VCF with other VCFs/BEDs/tabixed files
☆403Jun 16, 2026Updated 3 months ago
Alternatives and similar repositories for vcfanno
Users that are interested in vcfanno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cython + htslib == fast VCF and BCF processing☆450Sep 10, 2026Updated last month
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated last year
- a lightweight db framework for exploring genetic variation.☆328Apr 28, 2020Updated 6 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆152Feb 17, 2026Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated 5 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆878May 2, 2026Updated 5 months ago
- Interval data structure☆235Mar 18, 2026Updated 6 months ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆339Sep 30, 2026Updated 2 weeks ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 7 months ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 3 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆537Oct 5, 2026Updated last week
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- Structural variant toolkit for VCFs☆426Oct 3, 2026Updated last week
- Bayesian genotyper for structural variants☆137Apr 13, 2026Updated 6 months ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Haplotype VCF comparison tools☆474Dec 7, 2023Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Structural variation and indel detection by local assembly☆259Aug 19, 2026Updated last month
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆686Oct 2, 2026Updated last week
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- Bayesian haplotype-based mutation calling☆327Feb 13, 2026Updated 8 months ago
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Smart VCF parser DSL☆84May 24, 2022Updated 4 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- nim wrapper for htslib for parsing genomics data files☆159Sep 30, 2026Updated 2 weeks ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆577Updated this week
- Java utilities for Bioinformatics☆526Sep 16, 2026Updated 3 weeks ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆146Aug 24, 2025Updated last year