brentp / vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
☆371Updated last year
Alternatives and similar repositories for vcfanno:
Users that are interested in vcfanno are comparing it to the libraries listed below
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 8 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆248Updated 9 months ago
- Annotation and Ranking of Structural Variation☆246Updated 2 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆267Updated last year
- BEDOPS: high-performance genomic feature operations☆319Updated last year
- VarDict☆194Updated last year
- Count bases in BAM/CRAM files☆314Updated 3 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆310Updated 9 months ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆215Updated 3 years ago
- ☆264Updated last month
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Toolset for SV simulation, comparison and filtering☆374Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆460Updated 3 weeks ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆209Updated 4 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆322Updated 2 years ago
- Structural variant toolkit for VCFs☆346Updated 2 weeks ago
- A tool for estimating repeat sizes☆191Updated last year
- A flexible framework for rapid genome analysis and interpretation☆316Updated 2 years ago
- Structural variation and indel detection by local assembly☆244Updated last week
- Bayesian haplotype-based mutation calling☆307Updated last week
- A structural variation pipeline for short-read sequencing☆183Updated this week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆264Updated last year
- tools for adding mutations to existing .bam files, used for testing mutation callers☆239Updated 5 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- C++ API & command-line toolkit for working with BAM data☆423Updated 8 months ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆245Updated last year