qunfengdong / BLCAView external linksLinks
☆35Nov 8, 2023Updated 2 years ago
Alternatives and similar repositories for BLCA
Users that are interested in BLCA are comparing it to the libraries listed below
Sorting:
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jan 20, 2026Updated 3 weeks ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 6 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 9 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆18Aug 30, 2018Updated 7 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Simulate metagenomic short reads from one or more populations.☆26Jan 29, 2025Updated last year
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jan 5, 2026Updated last month
- ☆17May 21, 2025Updated 8 months ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 8 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 6 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 4 years ago
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- Create and Query a Local Copy of GenBank in R☆27Mar 6, 2025Updated 11 months ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 4 years ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 5 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 3 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 6 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- SPecies level IdentificatioN of metaGenOmic amplicons☆11Apr 11, 2018Updated 7 years ago
- biogenerator☆13Dec 18, 2015Updated 10 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 2 months ago
- Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data☆144Feb 6, 2026Updated last week
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆17Dec 1, 2024Updated last year
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated last month
- Identify Organisms from a Stream of DNA Sequences☆13Mar 3, 2016Updated 9 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago