qunfengdong / BLCA
☆34Updated last year
Alternatives and similar repositories for BLCA:
Users that are interested in BLCA are comparing it to the libraries listed below
- ☆23Updated 6 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated last month
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- StaG Metagenomic Workflow Collaboration☆29Updated 5 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆21Updated 7 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆53Updated 4 months ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆51Updated last year
- Maximum likelihood demultiplexing☆46Updated last year
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 8 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆66Updated 2 weeks ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆51Updated 2 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Tools for visualising microbial community amplicon data☆67Updated 8 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 3 weeks ago