qunfengdong / BLCALinks
☆35Updated 2 years ago
Alternatives and similar repositories for BLCA
Users that are interested in BLCA are comparing it to the libraries listed below
Sorting:
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 3 years ago
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- R shiny app for interactive microbiome analysis☆56Updated 7 months ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆94Updated 2 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- ☆23Updated 7 years ago
- Tools for visualising microbial community amplicon data☆71Updated 2 months ago
- ☆63Updated 5 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 3 weeks ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last month
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Updated 9 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 4 months ago
- YAMP: Yet Another Metagenomic Pipeline☆62Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 6 months ago
- A collection of modules and sub-workflows for Nextflow☆28Updated 3 months ago
- Sample search by metadata and features☆47Updated 2 years ago