uci-cbcl / DanQLinks
A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
☆158Updated 8 years ago
Alternatives and similar repositories for DanQ
Users that are interested in DanQ are comparing it to the libraries listed below
Sorting:
- Deep neural networks for predicting CpG methylation☆149Updated 5 years ago
- Deep learning for gene expression inference☆145Updated 6 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆266Updated 5 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆262Updated 2 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 9 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- dna2vec: Consistent vector representations of variable-length k-mers☆189Updated 3 years ago
- Model zoo for genomics☆168Updated last year
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Training and testing of DeepBind models.☆98Updated 9 years ago
- Kipoi's model zoo API☆238Updated last year
- For anyone who are eager to applying deep learning in bioinformatics!☆124Updated 6 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- a framework for training sequence-level deep learning networks☆386Updated 9 months ago
- Training and evaluating a variational autoencoder for pan-cancer gene expression data☆172Updated 6 years ago
- DCell browser and gene deletion simulator☆123Updated 2 years ago
- ☆107Updated 7 years ago
- DSDE Deep Learning Club☆40Updated 6 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 8 years ago
- Deep learning infrastructure for genomics☆257Updated 3 years ago
- A place to collect papers that are related to deep learning and computational biology☆190Updated 9 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 8 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- DeepSEA in TensorFlow☆29Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- TF MOtif Discovery from Importance SCOres☆148Updated this week
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 7 months ago