A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
☆160Jan 14, 2017Updated 9 years ago
Alternatives and similar repositories for DanQ
Users that are interested in DanQ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆267Sep 14, 2020Updated 5 years ago
- A deep learning package for predicting TF binding☆42Jan 23, 2020Updated 6 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 6 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 9 years ago
- Deep learning for gene expression inference☆145Feb 18, 2019Updated 7 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 2 years ago
- ☆14May 26, 2020Updated 5 years ago
- Deep neural networks for predicting CpG methylation☆152Sep 30, 2019Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Aug 27, 2024Updated last year
- Training and testing of DeepBind models.☆100Oct 19, 2015Updated 10 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 9 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 7 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Oct 7, 2020Updated 5 years ago
- predicting expression effects of human genome variants ab initio from sequence☆133Jan 28, 2025Updated last year
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆64Feb 15, 2021Updated 5 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Jan 7, 2020Updated 6 years ago
- ☆22Jun 5, 2017Updated 8 years ago
- ☆13Jul 5, 2019Updated 6 years ago
- DeepSEA in TensorFlow☆31May 24, 2017Updated 8 years ago
- Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks☆10Feb 13, 2018Updated 8 years ago
- A list of deep learning implementations in biology☆2,128Mar 4, 2026Updated 2 weeks ago
- A curated list of awesome deep learning applications in the field of computational biology☆1,968Nov 7, 2021Updated 4 years ago
- An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data☆32May 22, 2018Updated 7 years ago
- Deep Feature Interaction Maps (DFIM)☆54Apr 9, 2019Updated 6 years ago
- ☆53Nov 14, 2023Updated 2 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 2 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Feb 6, 2019Updated 7 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- a framework for training sequence-level deep learning networks☆399Dec 16, 2024Updated last year
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- Review Paper: Deep Learning for Genomics: A Concise Overview☆72Mar 13, 2018Updated 8 years ago
- DCell browser and gene deletion simulator☆124Dec 14, 2022Updated 3 years ago
- A collaboratively written review paper on deep learning, genomics, and precision medicine☆1,273Dec 25, 2022Updated 3 years ago
- Docker image for the DeepBind method.☆16Nov 7, 2015Updated 10 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 6 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago