iDeep: integrated prediction of RNA-protein binding sites using deep learning
☆39Oct 7, 2020Updated 5 years ago
Alternatives and similar repositories for iDeep
Users that are interested in iDeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- inferring RBP binding sites and motifs using local and global CNNs☆20Sep 29, 2019Updated 6 years ago
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 3 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 7 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Jul 19, 2018Updated 8 years ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Mar 4, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- Training and testing of DeepBind models.☆104Oct 19, 2015Updated 10 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆11Jan 26, 2024Updated 2 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 8 years ago
- Convert DeepBind models to Keras☆12Jul 15, 2018Updated 8 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆161Jan 14, 2017Updated 9 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 10 months ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PyDock Tutorial☆37Jul 2, 2018Updated 8 years ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 9 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- Predicting ncRNA-protein interaction using high-level features based on deep learning☆15May 2, 2020Updated 6 years ago
- icSHAPE pipeline☆32Oct 1, 2015Updated 10 years ago
- ☆13Feb 7, 2023Updated 3 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- ☆35Sep 6, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Sep 28, 2019Updated 6 years ago
- An R package for the Latent Environmental & Genetic InTeraction (LEGIT) model☆13Feb 11, 2021Updated 5 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆86Aug 25, 2020Updated 6 years ago
- ☆25May 16, 2020Updated 6 years ago
- This is the source code of CubicGAN generating cubic crystal structures using improved WGAN.☆11Jun 6, 2022Updated 4 years ago
- ☆12Nov 15, 2018Updated 7 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Machine learning on electronic health records☆11Jan 29, 2018Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Modelling RBP binding preferences to predict RPB binding sites☆11Aug 11, 2023Updated 3 years ago
- A R Bioconductor package for accessing MyGene.info services☆12Jun 22, 2018Updated 8 years ago
- Source code for "Unsupervised Object Representation Learning using Translation and Rotation Group Equivariant VAE," in pytorch. NeurIPS 2…☆19Jan 13, 2023Updated 3 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- 基于YoloV3和行人重识别模型的特定行人检索☆12May 25, 2022Updated 4 years ago
- A Game Engine Made in Python with the Pygame Module☆18Jun 3, 2022Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago