Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding
☆15Nov 5, 2018Updated 7 years ago
Alternatives and similar repositories for ismb2017_lstm
Users that are interested in ismb2017_lstm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- For training very deep networks☆10Jun 12, 2017Updated 8 years ago
- Implementation of IJCAI15 cascade cnn and LSTM for protein secondary structure prediction☆37May 21, 2017Updated 8 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 7 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 2 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Jul 18, 2019Updated 6 years ago
- ☆21Mar 20, 2017Updated 9 years ago
- Inferring disease-associated miRNAs☆10Mar 21, 2020Updated 6 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Integrative orthogonal non-negative matrix factorization☆31Sep 29, 2019Updated 6 years ago
- ☆15Mar 7, 2016Updated 10 years ago
- ☆16Mar 3, 2023Updated 3 years ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Mar 19, 2020Updated 6 years ago
- ☆15May 3, 2024Updated last year
- The Shape of Data: Intrinsic Distance for Comparing Data Distributions☆12Sep 25, 2019Updated 6 years ago
- A deep learning framework for predicting lncRNA–disease associations☆10Dec 29, 2020Updated 5 years ago
- ☆10Jun 21, 2025Updated 9 months ago
- PaiNN in jax☆11Jan 14, 2025Updated last year
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- Single-cell Analysis of Host-Microbiome Interactions☆11Jul 17, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MIT开发的支持整数向量的同态加密 支持向量的加法，乘法和内积☆15Jun 12, 2020Updated 5 years ago
- Leveraging Local and Global Patterns for Self-Attention Networks☆12Jun 3, 2019Updated 6 years ago
- Predicting lncRNA-disease associations in heterogeneous network based on deep learning method.☆13May 11, 2020Updated 5 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 2 years ago
- ☆10May 16, 2020Updated 5 years ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17Updated this week
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 6 months ago
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- Calculate similarity with embedding☆11Jan 22, 2022Updated 4 years ago
- JOKES☆11Apr 16, 2023Updated 3 years ago
- single cell sequencing analysis tutorial☆18Jan 15, 2020Updated 6 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 4 years ago
- Genome-Phenome Wide Association Study☆15Feb 7, 2023Updated 3 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Aug 9, 2017Updated 8 years ago