minxueric / ismb2017_lstmLinks
Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding
☆14Updated 6 years ago
Alternatives and similar repositories for ismb2017_lstm
Users that are interested in ismb2017_lstm are comparing it to the libraries listed below
Sorting:
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 6 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 5 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Updated 6 years ago
- ☆12Updated 6 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Updated 8 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- inferring sequence-structure motifs using deep learning☆39Updated 2 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Updated 8 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 7 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆26Updated 8 years ago
- ☆13Updated 6 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Updated 8 years ago
- Source code of the paper "DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations"☆13Updated 8 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 8 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 4 years ago
- Integrative orthogonal non-negative matrix factorization☆32Updated 6 years ago
- Tools for munging genomic data☆21Updated 6 years ago
- ☆23Updated 2 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago
- ☆11Updated 5 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆31Updated 3 months ago