Alternatives and similar repositories for CpGenie

Users that are interested in CpGenie are comparing it to the libraries listed below

• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• minxueric / ismb2017_lstm
  Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding
  ☆14Updated 6 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• ilanbb / dlprb
  DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding
  ☆13Updated 6 years ago
• hiranumn / DeepATACseq
  Repository for the code for DeepATAC project presented at WCB workshop in ICML2017
  ☆22Updated 7 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 8 years ago
• kimmo1019 / Deopen
  A hybrid deep convolutional neural network for predicting chromatin accessibility
  ☆24Updated 6 years ago
• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆33Updated 5 years ago
• realbigws / DeepBound
  Predict the boundary of transcript start and end from RNA-seq reads alignment
  ☆11Updated 8 years ago
• emreg00 / pepper
  PePPer - Personalized Perturbation Profiler
  ☆11Updated 6 years ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆63Updated 4 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• uci-cbcl / HLA-bind
  Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
  ☆26Updated 7 years ago
• QData / DeepMotif
  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
  ☆46Updated 6 years ago
• yifeng-li / DECRES
  Deep learning for identifying cis-regulatory elements and other applications
  ☆33Updated 8 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆98Updated 9 months ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago
• arefeen / DeepPASTA
  ☆10Updated 5 years ago
• uci-cbcl / DeepCons
  Understanding sequence conservation with deep learning
  ☆20Updated 8 years ago
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆44Updated 2 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• pombo-lab / gamtools
  Processing, quality control and analysis of GAM datsets
  ☆9Updated 2 years ago
• idekerlab / Network_Evaluation_Tools
  Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.
  ☆32Updated 2 years ago
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 9 years ago
• openvax / vaxrank
  Ranked vaccine peptides for personalized cancer immunotherapy
  ☆58Updated 9 months ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆21Updated last year