Alternatives and similar repositories for selene

Users that are interested in selene are comparing it to the libraries listed below

• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆258Updated 3 years ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆237Updated last year
• pnpnpn / dna2vec
  dna2vec: Consistent vector representations of variable-length k-mers
  ☆189Updated 3 years ago
• kipoi / models
  Model zoo for genomics
  ☆168Updated last year
• calico / basenji
  Sequential regulatory activity predictions with deep convolutional neural networks.
  ☆443Updated 2 months ago
• liyu95 / Deep_learning_examples
  Examples of using deep learning in Bioinformatics
  ☆429Updated last year
• abidlabs / deep-learning-genomics-primer
  Contains files for the deep learning in genomics primer.
  ☆265Updated 6 years ago
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆145Updated last year
• kundajelab / dragonn
  A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
  ☆261Updated 2 years ago
• Bjoux2 / DeepLearning-in-Bioinformatics
  For anyone who are eager to applying deep learning in bioinformatics!
  ☆124Updated 6 years ago
• davek44 / Basset
  Convolutional neural network analysis for predicting DNA sequence activity.
  ☆261Updated 4 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆160Updated last year
• greenelab / tybalt
  Training and evaluating a variational autoencoder for pan-cancer gene expression data
  ☆170Updated 6 years ago
• uci-cbcl / DanQ
  A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
  ☆158Updated 8 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago
• cangermueller / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆148Updated 5 years ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆128Updated 6 months ago
• Illumina / SpliceAI
  A deep learning-based tool to identify splice variants
  ☆453Updated 3 weeks ago
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆211Updated 2 months ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆398Updated last year
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆63Updated 4 years ago
• jisraeli / DeepBind
  Training and testing of DeepBind models.
  ☆97Updated 9 years ago
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆171Updated last year
• uci-cbcl / D-GEX
  Deep learning for gene expression inference
  ☆145Updated 6 years ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆269Updated last month
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆112Updated 3 years ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆246Updated 4 months ago
• bioinform / neusomatic
  NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
  ☆170Updated 3 years ago
• guma44 / GEOparse
  Python library to access Gene Expression Omnibus Database (GEO)
  ☆155Updated last year
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆831Updated last year