Alternatives and similar repositories for selene

Users that are interested in selene are comparing it to the libraries listed below

• kipoi / models
  Model zoo for genomics
  ☆166Updated 9 months ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆257Updated 3 years ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆236Updated last year
• calico / basenji
  Sequential regulatory activity predictions with deep convolutional neural networks.
  ☆430Updated last month
• liyu95 / Deep_learning_examples
  Examples of using deep learning in Bioinformatics
  ☆422Updated last year
• pnpnpn / dna2vec
  dna2vec: Consistent vector representations of variable-length k-mers
  ☆185Updated 2 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆154Updated 9 months ago
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆136Updated last year
• davek44 / Basset
  Convolutional neural network analysis for predicting DNA sequence activity.
  ☆260Updated 4 years ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆806Updated 10 months ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆237Updated last month
• Bjoux2 / DeepLearning-in-Bioinformatics
  For anyone who are eager to applying deep learning in bioinformatics!
  ☆123Updated 6 years ago
• Illumina / SpliceAI
  A deep learning-based tool to identify splice variants
  ☆436Updated last year
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆127Updated 3 months ago
• abidlabs / deep-learning-genomics-primer
  Contains files for the deep learning in genomics primer.
  ☆267Updated 5 years ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆263Updated last month
• kundajelab / dragonn
  A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
  ☆260Updated last year
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago
• uci-cbcl / DanQ
  A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
  ☆158Updated 8 years ago
• jisraeli / DeepBind
  Training and testing of DeepBind models.
  ☆95Updated 9 years ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆468Updated last week
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆170Updated last year
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆113Updated 3 years ago
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆207Updated 11 months ago
• kheyer / Genomic-ULMFiT
  ULMFiT for Genomic Sequence Data
  ☆285Updated 5 years ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆468Updated 2 months ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆392Updated 11 months ago
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆627Updated last month
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆229Updated 4 months ago
• jmschrei / tangermeme
  Biological sequence analysis for the modern age.
  ☆222Updated this week