FunctionLab / selene
a framework for training sequence-level deep learning networks
☆378Updated last month
Alternatives and similar repositories for selene:
Users that are interested in selene are comparing it to the libraries listed below
- Deep learning infrastructure for genomics☆256Updated 3 years ago
- Model zoo for genomics☆166Updated 6 months ago
- Kipoi's model zoo API☆235Updated 9 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆422Updated 8 months ago
- TF MOtif Discovery from Importance SCOres☆132Updated last year
- For anyone who are eager to applying deep learning in bioinformatics!☆122Updated 6 years ago
- predicting expression effects of human genome variants ab initio from sequence☆125Updated this week
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Examples of using deep learning in Bioinformatics☆407Updated 10 months ago
- dna2vec: Consistent vector representations of variable-length k-mers☆182Updated 2 years ago
- Peptide-MHC I binding affinity prediction☆199Updated 2 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆148Updated 5 months ago
- Training and evaluating a variational autoencoder for pan-cancer gene expression data☆165Updated 5 years ago
- Contains files for the deep learning in genomics primer.☆265Updated 5 years ago
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆170Updated last year
- Convolutional neural network analysis for predicting DNA sequence activity.☆258Updated 4 years ago
- Jupyter notebook based genomic data visualization toolkit.☆231Updated 6 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆241Updated last week
- deep residual neural network for classifying the pathogenicity of missense mutations.☆114Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆789Updated 6 months ago
- Deep learning based processing of Atac-seq data☆129Updated last year
- Biological sequence analysis for the modern age.☆206Updated last month
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆386Updated 7 months ago
- Examples of single-cell genomic analysis accelerated with RAPIDS☆331Updated last year
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆167Updated 3 years ago
- Performant Pythonic GenomicRanges☆451Updated 7 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆433Updated last month
- Unified biological sequence manipulation in Python☆208Updated 7 months ago
- Bioinformatics data analysis and visualization toolkit☆343Updated 8 months ago
- Training and testing of DeepBind models.☆92Updated 9 years ago