a framework for training sequence-level deep learning networks
☆399Dec 16, 2024Updated last year
Alternatives and similar repositories for selene
Users that are interested in selene are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Kipoi's model zoo API☆242Dec 17, 2025Updated 4 months ago
- Deep learning infrastructure for genomics☆258Sep 29, 2021Updated 4 years ago
- predicting expression effects of human genome variants ab initio from sequence☆135Jan 28, 2025Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆468Jan 15, 2026Updated 3 months ago
- Model zoo for genomics☆174Dec 17, 2025Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- code to run sei and obtain sei and sequence class predictions☆113Dec 20, 2022Updated 3 years ago
- TF MOtif Discovery from Importance SCOres☆178Feb 20, 2026Updated 2 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆103Mar 3, 2025Updated last year
- A list of deep learning implementations in biology☆2,134Mar 4, 2026Updated last month
- Convolutional neural network analysis for predicting DNA sequence activity.☆267Sep 14, 2020Updated 5 years ago
- ☆19Oct 21, 2024Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆257Dec 4, 2025Updated 4 months ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated 2 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆179Mar 19, 2026Updated last month
- A python library for creating simulated regulatory DNA sequences☆39Feb 22, 2023Updated 3 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆120Mar 17, 2022Updated 4 years ago
- Biological sequence analysis for the modern age.☆274Updated this week
- ULMFiT for Genomic Sequence Data☆286Nov 15, 2019Updated 6 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,607Updated this week
- A python extension for quick access to bigWig and bigBed files☆243Jan 14, 2026Updated 3 months ago
- Simple and efficient access to genomic data for deep learning models.☆42Jan 9, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Feb 10, 2023Updated 3 years ago
- Python and C++ code for reading and writing genomics data.☆798Dec 9, 2021Updated 4 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆878Jul 10, 2024Updated last year
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆561Jul 7, 2025Updated 9 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆97Mar 1, 2025Updated last year
- Genomic Pre-trained Network☆339Mar 25, 2026Updated last month
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Jun 9, 2021Updated 4 years ago
- genes and genomes at your fingertips☆411Mar 5, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆115Apr 20, 2026Updated last week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆69Sep 13, 2022Updated 3 years ago
- DCell browser and gene deletion simulator☆125Dec 14, 2022Updated 3 years ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆749Jan 22, 2026Updated 3 months ago
- A python library for accessing 2bit files☆21Apr 21, 2026Updated last week
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago