FunctionLab / selene
a framework for training sequence-level deep learning networks
☆374Updated 2 months ago
Related projects: ⓘ
- Deep learning infrastructure for genomics☆252Updated 2 years ago
- Model zoo for genomics☆163Updated last month
- Kipoi's model zoo API☆231Updated 4 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆391Updated 3 months ago
- Examples of using deep learning in Bioinformatics☆400Updated 5 months ago
- For anyone who are eager to applying deep learning in bioinformatics!☆116Updated 5 years ago
- TF MOtif Discovery from Importance SCOres☆121Updated 7 months ago
- dna2vec: Consistent vector representations of variable-length k-mers☆180Updated 2 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆254Updated 4 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆253Updated last year
- Contains files for the deep learning in genomics primer.☆260Updated 5 years ago
- predicting expression effects of human genome variants ab initio from sequence☆117Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆755Updated 2 months ago
- Deep neural networks for predicting CpG methylation☆143Updated 4 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆155Updated 7 years ago
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆172Updated 8 months ago
- A deep learning-based tool to identify splice variants☆399Updated 6 months ago
- Examples of single-cell genomic analysis accelerated with RAPIDS☆319Updated last year
- Unified biological sequence manipulation in Python☆199Updated 3 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆413Updated last week
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆167Updated 2 years ago
- Python library to access Gene Expression Omnibus Database (GEO)☆137Updated last month
- A list of useful bioinformatics resources☆576Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆224Updated 2 months ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 4 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆141Updated last month
- Python library to handle Gene Ontology (GO) terms☆766Updated 2 months ago
- UniRep model, usage, and examples.☆334Updated 2 years ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆372Updated 3 months ago
- ULMFiT for Genomic Sequence Data☆282Updated 4 years ago