kipoi / models
Model zoo for genomics
☆166Updated 6 months ago
Alternatives and similar repositories for models:
Users that are interested in models are comparing it to the libraries listed below
- TF MOtif Discovery from Importance SCOres☆133Updated last year
- Kipoi's model zoo API☆235Updated 9 months ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 5 months ago
- predicting expression effects of human genome variants ab initio from sequence☆125Updated 3 weeks ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆150Updated 6 months ago
- Deep learning infrastructure for genomics☆256Updated 3 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Deep neural networks for predicting CpG methylation☆143Updated 5 years ago
- Jupyter notebook based genomic data visualization toolkit.☆232Updated last week
- a framework for training sequence-level deep learning networks☆378Updated 2 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆94Updated 4 months ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆114Updated 3 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆217Updated 2 months ago
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆130Updated 6 months ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 4 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆111Updated last year
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆88Updated last month
- A Python implementation of edgeR for differential expression analysis☆100Updated 5 years ago
- A python extension for quick access to bigWig and bigBed files☆225Updated last month
- Convolutional neural network analysis for predicting DNA sequence activity.☆258Updated 4 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆138Updated last week
- Downloader for ENCODE☆31Updated 4 years ago
- ☆83Updated 4 years ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆133Updated 8 months ago
- ☆59Updated 2 years ago
- Tissue-specific variant effect predictions on splicing☆40Updated last year
- For anyone who are eager to applying deep learning in bioinformatics!☆122Updated 6 years ago