kipoi / modelsLinks
Model zoo for genomics
☆168Updated last year
Alternatives and similar repositories for models
Users that are interested in models are comparing it to the libraries listed below
Sorting:
- Kipoi's model zoo API☆238Updated last year
- Deep learning infrastructure for genomics☆257Updated 3 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- TF MOtif Discovery from Importance SCOres☆146Updated last year
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆163Updated last year
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 7 months ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆119Updated 3 years ago
- a framework for training sequence-level deep learning networks☆385Updated 9 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 11 months ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- Deep neural networks for predicting CpG methylation☆148Updated 5 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- DCell browser and gene deletion simulator☆123Updated 2 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆124Updated 6 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆93Updated 8 months ago
- dna2vec: Consistent vector representations of variable-length k-mers☆189Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆44Updated 9 years ago
- ☆107Updated 7 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆158Updated 8 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- Training and testing of DeepBind models.☆98Updated 9 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆115Updated 4 years ago
- Deep learning for gene expression inference☆145Updated 6 years ago
- ☆66Updated 2 years ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆31Updated last month
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆148Updated last week