gifford-lab / Keras-genomicsLinks
Perform hyper-parameter tuning, training, testing and prediction with Keras
☆44Updated 7 years ago
Alternatives and similar repositories for Keras-genomics
Users that are interested in Keras-genomics are comparing it to the libraries listed below
Sorting:
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 9 months ago
- ☆23Updated 4 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- ☆10Updated 5 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆20Updated 5 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Updated 7 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆30Updated last year
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 6 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- ☆51Updated last year
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- Deep proteome inference from peptide profiles☆13Updated 4 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆33Updated 8 years ago
- DSDE Deep Learning Club☆40Updated 6 years ago