gifford-lab / Keras-genomicsLinks
Perform hyper-parameter tuning, training, testing and prediction with Keras
☆44Updated 7 years ago
Alternatives and similar repositories for Keras-genomics
Users that are interested in Keras-genomics are comparing it to the libraries listed below
Sorting:
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Updated 7 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 8 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Understanding sequence conservation with deep learning☆20Updated 8 years ago
- ☆24Updated 4 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- Deep proteome inference from peptide profiles☆13Updated 5 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- Predicting Future Influenza Virus Sequences with Machine Learning☆31Updated 7 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- ☆10Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆44Updated 9 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Updated 6 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago