Training and testing of DeepBind models.
☆101Oct 19, 2015Updated 10 years ago
Alternatives and similar repositories for DeepBind
Users that are interested in DeepBind are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Oct 7, 2020Updated 5 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆160Jan 14, 2017Updated 9 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- Docker image for the DeepBind method.☆16Nov 7, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 7 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences☆15Dec 9, 2016Updated 9 years ago
- ☆28Oct 3, 2023Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- DeepSEA in TensorFlow☆32May 24, 2017Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆52Mar 25, 2026Updated last month
- ☆10May 16, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Apr 12, 2023Updated 3 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆34Aug 1, 2024Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆469Jan 15, 2026Updated 3 months ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 2 years ago
- Pembrolizumab-like Antibody Hallucination using AlphaFold2☆16Nov 10, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆21Dec 10, 2019Updated 6 years ago
- TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism☆25Jan 14, 2021Updated 5 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Antigen-receptor Design Against Peptide-MHC Targets☆21Jan 9, 2026Updated 3 months ago
- Transcript assembly and quantification for RNA-Seq☆12Jun 3, 2019Updated 6 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Mar 19, 2026Updated last month
- A list of deep learning implementations in biology☆2,135Mar 4, 2026Updated 2 months ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Jul 19, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆83Feb 3, 2021Updated 5 years ago
- Tensor Switching Networks☆12Nov 2, 2017Updated 8 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆91Mar 27, 2026Updated last month
- ☆23Jul 8, 2025Updated 9 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Jupyter Notebook to demonstrate the use of Neural Networks for Transcription Factor Binding Site Prediction☆13Jun 20, 2017Updated 8 years ago