Alternatives and similar repositories for DeepBind

Users that are interested in DeepBind are comparing it to the libraries listed below

• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆52Updated 6 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆153Updated 9 months ago
• kipoi / models
  Model zoo for genomics
  ☆166Updated 9 months ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆127Updated 3 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆47Updated 5 years ago
• Bjoux2 / DeepLearning-in-Bioinformatics
  For anyone who are eager to applying deep learning in bioinformatics!
  ☆123Updated 6 years ago
• MyungjaeSong / Paired-Library
  ☆54Updated 3 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• xypan1232 / iDeepS
  inferring sequence-structure motifs using deep learning
  ☆37Updated last year
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆146Updated last month
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆119Updated 2 years ago
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆94Updated last year
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆96Updated 7 months ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆64Updated last year
• JJAlmagro / subcellular_localization
  ☆59Updated 7 years ago
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆203Updated last month
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆215Updated 3 years ago
• bm2-lab / DeepCRISPR
  ☆60Updated 2 years ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆102Updated 2 years ago
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆172Updated 2 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆75Updated last year
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆114Updated 3 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 9 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆57Updated last month
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆172Updated last year
• ntranoslab / esm-variants
  ☆73Updated last year
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆81Updated 8 months ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• DasLab / draw_rna
  Draw RNA secondary structures in python.
  ☆48Updated 8 months ago