jisraeli / DeepBindLinks
Training and testing of DeepBind models.
☆97Updated 9 years ago
Alternatives and similar repositories for DeepBind
Users that are interested in DeepBind are comparing it to the libraries listed below
Sorting:
- For anyone who are eager to applying deep learning in bioinformatics!☆124Updated 6 years ago
- ☆58Updated 8 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Updated 6 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- Peptide-MHC I binding affinity prediction☆213Updated 2 months ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 10 months ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆21Updated last year
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆160Updated last year
- ☆57Updated 3 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated 11 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆49Updated 11 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- ☆65Updated 2 years ago
- TF MOtif Discovery from Importance SCOres☆145Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated 2 months ago
- Model zoo for genomics☆168Updated last year
- predicting expression effects of human genome variants ab initio from sequence☆128Updated 6 months ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆132Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 2 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Draw RNA secondary structures in python.☆48Updated last month
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆177Updated last year
- dna2vec: Consistent vector representations of variable-length k-mers☆189Updated 3 years ago
- ☆77Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆55Updated 3 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Updated 8 years ago
- A visible neural network model for drug response prediction☆147Updated last year