jisraeli / DeepBind
Training and testing of DeepBind models.
☆92Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for DeepBind
- CNN architecture for predicting DNA binding sites for Transcription Factors☆48Updated 5 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆113Updated last year
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆141Updated 3 months ago
- predicting expression effects of human genome variants ab initio from sequence☆119Updated 3 years ago
- Peptide-MHC I binding affinity prediction☆193Updated this week
- A generative latent variable model for biological sequence families.☆208Updated 2 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆44Updated 5 years ago
- Python interface to running command-line and web-based MHC binding predictors☆89Updated last month
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆16Updated 4 months ago
- Deep networks for protein functional inference☆160Updated 2 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆156Updated 7 months ago
- ☆45Updated 3 years ago
- ☆56Updated 7 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆81Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆66Updated 7 months ago
- Evolutionary velocity with protein language models☆83Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆87Updated 2 weeks ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆42Updated 2 months ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆59Updated 8 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆96Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆43Updated 5 years ago
- Model zoo for genomics☆165Updated 3 months ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 3 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆120Updated 6 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆157Updated 7 years ago
- Primary RNA sequence model☆29Updated 5 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆47Updated 2 years ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆47Updated 3 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆43Updated 11 months ago