jisraeli / DeepBind
Training and testing of DeepBind models.
☆95Updated 9 years ago
Alternatives and similar repositories for DeepBind:
Users that are interested in DeepBind are comparing it to the libraries listed below
- Peptide-MHC I binding affinity prediction☆199Updated 4 months ago
- predicting expression effects of human genome variants ab initio from sequence☆127Updated last month
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆151Updated 7 months ago
- A generative latent variable model for biological sequence families.☆214Updated 3 years ago
- Model zoo for genomics☆166Updated 7 months ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆51Updated 6 years ago
- Python interface to running command-line and web-based MHC binding predictors☆95Updated 5 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆118Updated 2 years ago
- RNA-seq prediction with deep convolutional neural networks.☆133Updated this week
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- ☆59Updated 2 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆124Updated 6 years ago
- Deep learning infrastructure for genomics☆258Updated 3 years ago
- ☆107Updated 6 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆72Updated 11 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆46Updated 7 months ago
- TF MOtif Discovery from Importance SCOres☆134Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆167Updated last year
- ☆71Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- ☆14Updated 5 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆123Updated 5 months ago
- code to run sei and obtain sei and sequence class predictions☆99Updated 2 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- inferring sequence-structure motifs using deep learning☆37Updated last year
- Deep networks for protein functional inference☆168Updated last week
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆219Updated 3 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆251Updated this week
- Draw RNA secondary structures in python.☆47Updated 6 months ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago