CNN architecture for predicting DNA binding sites for Transcription Factors
☆53Feb 6, 2019Updated 7 years ago
Alternatives and similar repositories for DeepBind-with-PyTorch
Users that are interested in DeepBind-with-PyTorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training and testing of DeepBind models.☆101Oct 19, 2015Updated 10 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 2 years ago
- DeepSEA in TensorFlow☆31May 24, 2017Updated 8 years ago
- Convert DeepBind models to Keras☆12Jul 15, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 8 years ago
- ☆24Apr 15, 2024Updated last year
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- ☆20Jul 16, 2024Updated last year
- DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape☆11Mar 16, 2023Updated 3 years ago
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 2 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Mar 19, 2026Updated 3 weeks ago
- the analysis script for PrismNet☆10May 17, 2020Updated 5 years ago
- ☆14Jun 14, 2019Updated 6 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆160Jan 14, 2017Updated 9 years ago
- Denoising Cifar10 images using deep learning with Keras☆16Sep 1, 2018Updated 7 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural netw…☆25Nov 16, 2020Updated 5 years ago
- ☆12Jan 23, 2020Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆26Nov 7, 2023Updated 2 years ago
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆18Nov 5, 2025Updated 5 months ago
- Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences☆15Dec 9, 2016Updated 9 years ago
- Estimation of Promoter Activity from RNA-Seq data☆57Jul 14, 2025Updated 8 months ago
- TF MOtif Discovery from Importance SCOres☆173Feb 20, 2026Updated last month
- EasyX tutorial for BUAA Soft 2023 Summer☆14Mar 21, 2024Updated 2 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- ☆14Jan 18, 2024Updated 2 years ago
- Deep learning in genomics☆20Jan 26, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆27May 29, 2023Updated 2 years ago
- TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism☆25Jan 14, 2021Updated 5 years ago
- SpatialPPIv2: Enhancing protein–protein interaction prediction through graph neural networks with protein language models.☆25Jan 8, 2026Updated 3 months ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 4 years ago
- ☆20Jul 20, 2015Updated 10 years ago
- Deep learning for modeling gene regulatory network☆22Sep 5, 2021Updated 4 years ago
- Brain-related -omics data☆28Mar 21, 2026Updated 3 weeks ago