MedChaabane / DeepBind-with-PyTorchLinks
CNN architecture for predicting DNA binding sites for Transcription Factors
☆52Updated 6 years ago
Alternatives and similar repositories for DeepBind-with-PyTorch
Users that are interested in DeepBind-with-PyTorch are comparing it to the libraries listed below
Sorting:
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆88Updated 3 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆67Updated 9 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Updated 4 months ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆136Updated 3 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 11 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- A VGAE-based model to infer transcription factor regulatory network☆28Updated 3 years ago
- TF MOtif Discovery from Importance SCOres☆161Updated last month
- ☆49Updated 4 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- ☆18Updated last year
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆32Updated last year
- ☆34Updated 11 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆169Updated 3 months ago
- A visible neural network model for drug response prediction☆150Updated 2 years ago
- ☆27Updated 2 years ago
- CMap Notebooks for LINCS 2020 Workshop☆49Updated 4 years ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- covolutional neural network based coexpression analysis☆79Updated 5 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- ☆59Updated 4 years ago
- Deep learning for modeling gene regulatory network☆22Updated 4 years ago
- ☆33Updated 5 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆31Updated 3 years ago