MedChaabane / DeepBind-with-PyTorch
CNN architecture for predicting DNA binding sites for Transcription Factors
☆48Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for DeepBind-with-PyTorch
- Knowledge-primed neural networks☆34Updated last year
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Updated 4 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆77Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 2 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 6 months ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆45Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆41Updated 2 months ago
- CRISPR Cas9 ontarget prediction software☆25Updated last year
- ☆67Updated last year
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆37Updated 3 years ago
- Predicting gene expression levels from genomic sequences☆50Updated 4 years ago
- code to run sei and obtain sei and sequence class predictions☆92Updated last year
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated last year
- HLA-II ligand predictor.☆35Updated last year
- A repository for neural representational learning of RNA secondary structures☆31Updated 4 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆34Updated last year
- A Deep Learning based Efficacy Prediction System for drug discovery☆62Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆36Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- ☆16Updated 8 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆47Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆16Updated 2 years ago
- This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking Unive…☆14Updated 5 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆113Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆66Updated 7 months ago
- Code for 5UTR project☆24Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆62Updated this week
- ☆22Updated 4 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆46Updated 7 months ago