MedChaabane / DeepBind-with-PyTorchLinks
CNN architecture for predicting DNA binding sites for Transcription Factors
☆52Updated 6 years ago
Alternatives and similar repositories for DeepBind-with-PyTorch
Users that are interested in DeepBind-with-PyTorch are comparing it to the libraries listed below
Sorting:
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆82Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 3 months ago
- ☆29Updated 4 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆66Updated 2 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆130Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated last month
- Knowledge-primed neural networks☆38Updated 2 years ago
- A visible neural network model for drug response prediction☆144Updated last year
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆54Updated 3 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆64Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated last week
- covolutional neural network based coexpression analysis☆78Updated 5 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated last year
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆159Updated 11 months ago
- ☆18Updated last year
- A VGAE-based model to infer transcription factor regulatory network☆27Updated 2 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 3 years ago
- predicting expression effects of human genome variants ab initio from sequence☆128Updated 5 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆118Updated 5 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- code to run sei and obtain sei and sequence class predictions☆105Updated 2 years ago
- ☆50Updated 4 years ago
- Deep learning for modeling gene regulatory network☆22Updated 3 years ago
- ☆56Updated 3 years ago
- ☆27Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago