MedChaabane / DeepBind-with-PyTorchLinks
CNN architecture for predicting DNA binding sites for Transcription Factors
☆52Updated 6 years ago
Alternatives and similar repositories for DeepBind-with-PyTorch
Users that are interested in DeepBind-with-PyTorch are comparing it to the libraries listed below
Sorting:
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆84Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)☆61Updated 6 months ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆134Updated 3 years ago
- A visible neural network model for drug response prediction☆148Updated 2 years ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 8 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated 2 weeks ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- ☆58Updated 4 years ago
- ☆28Updated 5 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- TF MOtif Discovery from Importance SCOres☆148Updated this week
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- A VGAE-based model to infer transcription factor regulatory network☆28Updated 3 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆166Updated last week
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆29Updated 3 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆124Updated 8 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆29Updated 10 months ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- A Deep Learning based Efficacy Prediction System for drug discovery☆71Updated 2 years ago
- ☆18Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated last week
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 4 years ago
- ☆51Updated 4 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆48Updated 2 months ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated 2 years ago