wenjiegroup / BiRenLinks
☆13Updated 5 years ago
Alternatives and similar repositories for BiRen
Users that are interested in BiRen are comparing it to the libraries listed below
Sorting:
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 7 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 6 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Updated 8 years ago
- ☆12Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- ☆14Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- ☆11Updated 7 years ago
- ☆12Updated last year
- ☆31Updated 5 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Updated 7 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Training and testing of DeepSEA models.☆14Updated 9 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆33Updated 8 years ago
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆22Updated 7 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆17Updated 4 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Python utilities for building integrated views of TCGA data.☆32Updated 7 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- Processing, quality control and analysis of GAM datsets☆9Updated 2 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Updated 7 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago