Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
☆64Feb 15, 2021Updated 5 years ago
Alternatives and similar repositories for DeepChrome
Users that are interested in DeepChrome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆21Dec 10, 2019Updated 6 years ago
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Feb 8, 2021Updated 5 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Nov 15, 2018Updated 7 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- A deep learning package for predicting TF binding☆43Jan 23, 2020Updated 6 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆267Sep 14, 2020Updated 5 years ago
- Deep learning for gene expression inference☆145Feb 18, 2019Updated 7 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆160Jan 14, 2017Updated 9 years ago
- ☆13Jul 5, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 7 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 7 years ago
- ☆10Dec 12, 2017Updated 8 years ago
- Code for "Disentangling images with Lie group transformations and sparse coding" (2023).☆13May 24, 2021Updated 4 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 9 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 2 years ago
- DTI prediction method☆24Jan 22, 2024Updated 2 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for high-throughput DNA shape predictions and feature encoding☆20Jul 1, 2021Updated 4 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 2 years ago
- "Scutoids are a geometrical solution to three-dimensional packing of epithelia" - https://www.nature.com/articles/s41467-018-05376-1.☆12Feb 14, 2022Updated 4 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Jan 9, 2020Updated 6 years ago
- predicting expression effects of human genome variants ab initio from sequence☆135Jan 28, 2025Updated last year
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 7 years ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- Repository for my research on generative modelling of cell images☆14Dec 8, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a framework for training sequence-level deep learning networks☆399Dec 16, 2024Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Mar 26, 2026Updated last month
- ☆10Feb 12, 2019Updated 7 years ago
- Model zoo for genomics☆174Dec 17, 2025Updated 4 months ago
- A list of deep learning implementations in biology☆2,134Mar 4, 2026Updated last month
- Kipoi's model zoo API☆242Dec 17, 2025Updated 4 months ago
- ☆16Jan 6, 2025Updated last year