QData / DeepChromeLinks
Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
☆63Updated 4 years ago
Alternatives and similar repositories for DeepChrome
Users that are interested in DeepChrome are comparing it to the libraries listed below
Sorting:
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆21Updated 5 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 5 years ago
- Model zoo for genomics☆168Updated last year
- Deep learning for gene expression inference☆145Updated 6 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆75Updated 3 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆158Updated 8 years ago
- Deep neural networks for predicting CpG methylation☆150Updated 6 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- DSDE Deep Learning Club☆40Updated 6 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- Training and testing of DeepBind models.☆99Updated 9 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Updated 6 years ago
- Training and evaluating a variational autoencoder for pan-cancer gene expression data☆172Updated 6 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 8 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆26Updated 8 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 9 years ago
- dna2vec: Consistent vector representations of variable-length k-mers☆188Updated 3 years ago
- DCell browser and gene deletion simulator☆123Updated 2 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 8 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 7 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago