A list of deep learning implementations in biology
☆2,155Aug 3, 2026Updated last week
Alternatives and similar repositories for deeplearning-biology
Users that are interested in deeplearning-biology are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A curated list of awesome deep learning applications in the field of computational biology☆1,988Nov 7, 2021Updated 4 years ago
- A collaboratively written review paper on deep learning, genomics, and precision medicine☆1,280Dec 25, 2022Updated 3 years ago
- a framework for training sequence-level deep learning networks☆403Dec 16, 2024Updated last year
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,779Mar 19, 2026Updated 4 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,830Aug 1, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A curated list of awesome Bioinformatics libraries and software.☆4,231Apr 7, 2026Updated 4 months ago
- Examples of using deep learning in Bioinformatics☆453Mar 23, 2024Updated 2 years ago
- A list of useful bioinformatics resources☆637May 4, 2026Updated 3 months ago
- Python and C++ code for reading and writing genomics data.☆803Dec 9, 2021Updated 4 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 10 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆268Sep 14, 2020Updated 5 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆897Jul 10, 2024Updated 2 years ago
- Kipoi's model zoo API☆243Dec 17, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Applied Computational Genomics Course at UU: Spring 2020☆1,131Apr 5, 2024Updated 2 years ago
- Unix, R and python tools for genomics and data science☆1,404Aug 25, 2025Updated 11 months ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 8 years ago
- Deep neural networks for predicting CpG methylation☆153Sep 30, 2019Updated 6 years ago
- Listing of papers about machine learning for proteins.☆1,713May 31, 2024Updated 2 years ago
- A place to collect papers that are related to deep learning and computational biology☆189Feb 13, 2016Updated 10 years ago
- Model zoo for genomics☆175Dec 17, 2025Updated 7 months ago
- List of software packages for multi-omics analysis☆940Aug 4, 2026Updated last week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,674Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Curated (meta)list of resources for Biology.☆449May 17, 2026Updated 2 months ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆161Jan 14, 2017Updated 9 years ago
- Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology☆6,939Updated this week
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆85Oct 22, 2019Updated 6 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,436May 31, 2023Updated 3 years ago
- ULMFiT for Genomic Sequence Data☆287Nov 15, 2019Updated 6 years ago
- Deep learning infrastructure for genomics☆258Sep 29, 2021Updated 4 years ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆406Jul 8, 2026Updated last month
- Standardized data set for machine learning of protein structure☆918Nov 18, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- RNAseq analysis notes from Ming Tang☆1,096Nov 15, 2021Updated 4 years ago
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated 2 years ago
- Deep learning for gene expression inference☆148Feb 18, 2019Updated 7 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,030Aug 24, 2024Updated last year
- Single-cell analysis in Python. Scales to >100M cells.☆2,542Updated this week
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,585Dec 11, 2022Updated 3 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆123Oct 4, 2018Updated 7 years ago