DeepSEA in TensorFlow
☆32May 24, 2017Updated 9 years ago
Alternatives and similar repositories for deepsea
Users that are interested in deepsea are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training and testing of DeepSEA models.☆16Oct 19, 2015Updated 10 years ago
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 7 years ago
- predicting expression effects of human genome variants ab initio from sequence☆137Jan 28, 2025Updated last year
- ☆12Nov 15, 2018Updated 7 years ago
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- ☆15Jun 24, 2017Updated 9 years ago
- Analyses related to the Borzoi paper.☆29Dec 14, 2025Updated 6 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆102Mar 1, 2025Updated last year
- ☆21Jun 5, 2017Updated 9 years ago
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 3 years ago
- Code to build models that effectively predict promoter-driven gene expression☆12May 15, 2025Updated last year
- Convolutional neural network analysis for predicting DNA sequence activity.☆267Sep 14, 2020Updated 5 years ago
- A python library for creating simulated regulatory DNA sequences☆39Feb 22, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Sequential regulatory activity predictions with deep convolutional neural networks.☆472Jan 15, 2026Updated 5 months ago
- ☆15Nov 19, 2018Updated 7 years ago
- ☆33Dec 2, 2022Updated 3 years ago
- ☆28Nov 7, 2023Updated 2 years ago
- Implementation of a deep convolutional neural network for predicting chromatin features from DNA sequence☆16Jan 13, 2022Updated 4 years ago
- practice fusion contest☆11Dec 10, 2012Updated 13 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 3 months ago
- ☆11Jul 21, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago
- ☆10May 16, 2020Updated 6 years ago
- a framework for training sequence-level deep learning networks☆403Dec 16, 2024Updated last year
- Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.☆17Mar 7, 2026Updated 3 months ago
- pytorch faster r-cnn☆11Dec 21, 2020Updated 5 years ago
- An actionable database of publicly available single-cell RNA-seq data☆41Apr 13, 2019Updated 7 years ago
- Training and testing of DeepBind models.☆104Oct 19, 2015Updated 10 years ago
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆37Apr 1, 2025Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆31Apr 1, 2025Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆53Aug 13, 2024Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Jun 9, 2021Updated 5 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Scripts related to building major-allele references for Bowtie and Bowtie 2☆13Jun 3, 2021Updated 5 years ago