Alternatives and similar repositories for deepsea:

Users that are interested in deepsea are comparing it to the libraries listed below

• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated 11 months ago
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• gagneurlab / MMSplice_MTSplice
  Tissue-specific variant effect predictions on splicing
  ☆42Updated last year
• zhangyan32 / HiCPlus
  ☆31Updated 5 years ago
• Dongwon-Lee / lsgkm
  ☆50Updated last year
• kundajelab / ChromDragoNN
  Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…
  ☆44Updated 3 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆52Updated 4 years ago
• weng-lab / BENGI
  ☆18Updated 2 years ago
• PMBio / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆37Updated 8 years ago
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆111Updated last year
• raphael-group / hierarchical-hotnet
  Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
  ☆36Updated 5 years ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆81Updated 7 months ago
• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆33Updated 5 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆16Updated 3 years ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆43Updated last year
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 6 years ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆30Updated 7 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆36Updated 2 years ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆24Updated 2 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago
• ohlerlab / DeepRiPe
  ☆24Updated last year
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆40Updated 2 years ago
• TranslationalBioinformaticsUnit / singlecelldb
  An actionable database of publicly available single-cell RNA-seq data
  ☆41Updated 6 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• wanwenzeng / ep2vec
  ☆22Updated 7 years ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• scottgigante / machine-learning-tutorial
  Machine learning tutorial for biologists, designed for Oz Single Cells 2019
  ☆15Updated 5 years ago
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆39Updated 3 years ago
• ma-compbio / PEP
  ☆14Updated 4 years ago