A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
☆264Aug 1, 2023Updated 2 years ago
Alternatives and similar repositories for dragonn
Users that are interested in dragonn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convolutional neural network analysis for predicting DNA sequence activity.☆267Sep 14, 2020Updated 5 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆160Jan 14, 2017Updated 9 years ago
- Deep Feature Interaction Maps (DFIM)☆54Apr 9, 2019Updated 6 years ago
- Public facing deeplift repo☆873Apr 28, 2022Updated 3 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Jan 9, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Kipoi's model zoo API☆241Dec 17, 2025Updated 3 months ago
- a framework for training sequence-level deep learning networks☆399Dec 16, 2024Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆466Jan 15, 2026Updated 2 months ago
- ATAC-seq and DNase-seq processing pipeline☆165Jun 21, 2022Updated 3 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 7 years ago
- Downloader for ENCODE☆32Oct 5, 2020Updated 5 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 9 years ago
- Deep neural networks for predicting CpG methylation☆152Sep 30, 2019Updated 6 years ago
- A collaboratively written review paper on deep learning, genomics, and precision medicine☆1,273Dec 25, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Model zoo for genomics☆174Dec 17, 2025Updated 3 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Jun 9, 2021Updated 4 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 6 years ago
- A list of deep learning implementations in biology☆2,126Mar 4, 2026Updated 3 weeks ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- A python library for creating simulated regulatory DNA sequences☆39Feb 22, 2023Updated 3 years ago
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- A curated list of awesome deep learning applications in the field of computational biology☆1,968Nov 7, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- CS273B Deep Learning for Genomics Course Materials☆34Sep 9, 2020Updated 5 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Oct 3, 2017Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- A deep learning package for predicting TF binding☆42Jan 23, 2020Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Deep learning for gene expression inference☆145Feb 18, 2019Updated 7 years ago
- Deep learning infrastructure for genomics☆257Sep 29, 2021Updated 4 years ago
- Python and C++ code for reading and writing genomics data.☆799Dec 9, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆120Mar 17, 2022Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 4 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Dec 12, 2018Updated 7 years ago
- TF MOtif Discovery from Importance SCOres☆170Feb 20, 2026Updated last month
- ☆10Jan 20, 2023Updated 3 years ago
- Concise: Keras extension for regulatory genomics☆35Dec 26, 2022Updated 3 years ago