deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
☆22Feb 10, 2023Updated 3 years ago
Alternatives and similar repositories for deepomics
Users that are interested in deepomics are comparing it to the libraries listed below
Sorting:
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Jan 7, 2020Updated 6 years ago
- ☆14Jun 14, 2019Updated 6 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- A deep learning framework for predicting chemical synthesis☆26Aug 12, 2024Updated last year
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 6 years ago
- Using Fastai library to classify Twitter jokes in Spanish☆12Jul 4, 2019Updated 6 years ago
- Predicting Protein – Ligand Interaction by using Deep Learning Models☆11Nov 13, 2018Updated 7 years ago
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆12Nov 12, 2021Updated 4 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Apr 22, 2021Updated 4 years ago
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- OCEAN - Optimized Cross rEActivity estimatioN☆11Apr 29, 2020Updated 5 years ago
- Getting started guide to using GPUs for nCoV2019 research☆14Apr 24, 2020Updated 5 years ago
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆18Nov 5, 2025Updated 3 months ago
- ☆21Mar 20, 2017Updated 8 years ago
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆13Jun 22, 2022Updated 3 years ago
- Manifold-Mixup implementation for fastai V2☆17Oct 1, 2020Updated 5 years ago
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- PCA and normal mode analysis of proteins☆20May 16, 2024Updated last year
- Deep learning to solve RNA design puzzles☆20Feb 4, 2025Updated last year
- Deep Learning tools for medical image and biomarker analysis☆19Jan 11, 2023Updated 3 years ago
- ☆17Nov 23, 2021Updated 4 years ago
- CS273B Deep Learning for Genomics Course Materials☆34Sep 9, 2020Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Sep 24, 2020Updated 5 years ago
- ☆19Feb 25, 2025Updated last year
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 3 years ago
- Easily optimize generic performance metrics in differentiable learning.☆18Jun 6, 2020Updated 5 years ago
- ☆23Jun 25, 2021Updated 4 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19May 5, 2019Updated 6 years ago
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 3 years ago
- This package is meant to calculate the dihedral entropy of a biomolecule. However, it can also calculate the entropy of any binnable dat…☆23Feb 2, 2024Updated 2 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Jun 9, 2021Updated 4 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Oct 22, 2019Updated 6 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 3 months ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆267Sep 14, 2020Updated 5 years ago
- Fast and accurate protein structure prediction☆57Jan 17, 2025Updated last year
- Python implementation of the Ramachandran plot☆55Jul 20, 2025Updated 7 months ago