Alternatives and similar repositories for deepomics

Users that are interested in deepomics are comparing it to the libraries listed below

• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• hiranumn / DeepATACseq
  Repository for the code for DeepATAC project presented at WCB workshop in ICML2017
  ☆22Updated 7 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 8 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆30Updated last year
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• NikolayOskolkov / LSTMNeanderthalDNA
  Implementation of LSTM for detecting regions of Neanderthal introgression in modern human genomes
  ☆9Updated 5 years ago
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆63Updated 4 years ago
• IBPA / DeepPep
  Deep proteome inference from peptide profiles
  ☆13Updated 5 years ago
• kundajelab / cs273b
  CS273B Deep Learning for Genomics Course Materials
  ☆33Updated 4 years ago
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆65Updated last year
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆38Updated 2 years ago
• gwh120104 / deepmetabolism
  DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing
  ☆31Updated 8 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 6 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆27Updated 2 years ago
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated 3 years ago
• nstrodt / USMPep
  Major Histocompatibility Complex (MHC) Binding Affinity Prediction
  ☆10Updated 4 years ago
• mims-harvard / pathways
  Disease pathways in the human interactome
  ☆23Updated 7 years ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 6 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• QData / DeepMotif
  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
  ☆46Updated 6 years ago
• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆33Updated 5 years ago
• TeoSakel / deep-drug-response
  ☆19Updated 4 years ago
• kimmo1019 / Deopen
  A hybrid deep convolutional neural network for predicting chromatin accessibility
  ☆24Updated 6 years ago
• daquang / YAMDA
  Yet Another Motif Discovery Algorithm
  ☆53Updated 6 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• ericmjl / flu-sequence-predictor
  An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.
  ☆37Updated last year