p-koo / deepomics
deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
☆23Updated last year
Related projects ⓘ
Alternatives and complementary repositories for deepomics
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Simple and efficient access to genomic data for deep learning models.☆43Updated 4 years ago
- Concise: Keras extension for regulatory genomics☆34Updated last year
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- Disease pathways in the human interactome☆23Updated 6 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆25Updated 7 months ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆28Updated 7 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆44Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆52Updated 5 years ago
- Data and analysis for the Splatter paper☆28Updated 6 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆48Updated last year
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆31Updated 4 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 3 years ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆50Updated 2 years ago
- Computational biology utility scripts☆19Updated 4 months ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆77Updated 2 months ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- ☆12Updated 5 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆19Updated 3 years ago
- Code sharing related to DREAM challenges☆23Updated 7 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆43Updated last year
- Deep proteome inference from peptide profiles☆13Updated 4 years ago
- Tools for building and manipulating graphs in Python☆41Updated last year
- Code for the analyses in the human reference interactome paper.☆26Updated last year