cangermueller / deepcpgLinks
Deep neural networks for predicting CpG methylation
☆146Updated 5 years ago
Alternatives and similar repositories for deepcpg
Users that are interested in deepcpg are comparing it to the libraries listed below
Sorting:
- Model zoo for genomics☆166Updated 10 months ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 9 years ago
- Deep learning for gene expression inference☆145Updated 6 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆260Updated last year
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆158Updated 8 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆123Updated 6 years ago
- TF MOtif Discovery from Importance SCOres☆138Updated last year
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆260Updated 4 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- predicting expression effects of human genome variants ab initio from sequence☆127Updated 4 months ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆113Updated 3 years ago
- Kipoi's model zoo API☆236Updated last year
- Training and testing of DeepBind models.☆95Updated 9 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- Review Paper: Deep Learning for Genomics: A Concise Overview☆75Updated 7 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 9 months ago
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆171Updated 3 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆154Updated 10 months ago
- Course material in notebook format for learning about single cell bioinformatics methods☆102Updated 8 years ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆138Updated last year
- An actionable database of publicly available single-cell RNA-seq data☆41Updated 6 years ago
- ☆90Updated 4 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆88Updated 5 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆75Updated 3 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆113Updated last year
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago