Deep neural networks for predicting CpG methylation
☆153Sep 30, 2019Updated 6 years ago
Alternatives and similar repositories for deepcpg
Users that are interested in deepcpg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Feb 16, 2019Updated 7 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆268Sep 14, 2020Updated 5 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 7 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆161Jan 14, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- DNA methylation analysis notes from Ming Tang☆96Sep 19, 2019Updated 6 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 3 years ago
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 6 years ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- Model zoo for genomics☆175Dec 17, 2025Updated 7 months ago
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- A deep learning package for predicting TF binding☆43Jan 23, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆46Jul 6, 2017Updated 9 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- A list of deep learning implementations in biology☆2,155Aug 3, 2026Updated last week
- Python package to analyze DNA methylation data☆46Updated this week
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 5 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Aug 9, 2017Updated 9 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 3 months ago
- ☆22Jul 2, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Nov 15, 2018Updated 7 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Nov 5, 2018Updated 7 years ago
- Training and testing of DeepSEA models.☆16Oct 19, 2015Updated 10 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 9 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Jan 9, 2020Updated 6 years ago
- Deep neural networks for predicting CpG methylation☆38Apr 11, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Jul 5, 2019Updated 7 years ago
- Deep learning for gene expression inference☆148Feb 18, 2019Updated 7 years ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Mar 16, 2025Updated last year
- Demographic analysis of Brassica oleracea☆10May 19, 2026Updated 2 months ago
- ☆26Oct 15, 2020Updated 5 years ago
- Fast motif matching in R☆49Jan 24, 2024Updated 2 years ago
- ☆14May 26, 2020Updated 6 years ago