greenelab / adage
Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016
☆61Updated 8 years ago
Alternatives and similar repositories for adage
Users that are interested in adage are comparing it to the libraries listed below
Sorting:
- Deep neural networks for predicting CpG methylation☆146Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Deep learning for gene expression inference☆145Updated 6 years ago
- DSDE Deep Learning Club☆40Updated 6 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆260Updated 4 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆260Updated last year
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 6 years ago
- A place to collect papers that are related to deep learning and computational biology☆186Updated 9 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- ☆50Updated last year
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆158Updated 8 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆106Updated 2 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆108Updated 2 years ago
- Yet Another Motif Discovery Algorithm☆53Updated 6 years ago
- Model zoo for genomics☆166Updated 9 months ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Library for manipulating genomic variants and predicting their effects☆84Updated 10 months ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆57Updated 7 months ago
- MuTect -- Accurate and sensitive cancer mutation detection☆96Updated 2 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆65Updated 4 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆113Updated last year
- Deep learning for identifying cis-regulatory elements and other applications☆33Updated 8 years ago