pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
☆86Oct 22, 2019Updated 6 years ago
Alternatives and similar repositories for pysster
Users that are interested in pysster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10May 16, 2020Updated 6 years ago
- A mini-framework to build and train neural networks for molecular biology.☆10Mar 23, 2018Updated 8 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Jul 19, 2018Updated 7 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Jan 9, 2020Updated 6 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep learning for gene expression inference☆147Feb 18, 2019Updated 7 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated last year
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆76Jan 7, 2022Updated 4 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- Kipoi's model zoo API☆242Dec 17, 2025Updated 6 months ago
- Deep learning infrastructure for genomics☆258Sep 29, 2021Updated 4 years ago
- Model zoo for genomics☆175Dec 17, 2025Updated 6 months ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 3 years ago
- Applied Statistics for High-Throughput Biology☆16Jul 18, 2025Updated 11 months ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 8 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Feb 10, 2023Updated 3 years ago
- A list of deep learning implementations in biology☆2,148Mar 4, 2026Updated 4 months ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- predicting expression effects of human genome variants ab initio from sequence☆137Jan 28, 2025Updated last year
- A collection of command-line tools I wrote to make various repetitive tasks more convenient☆16May 17, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- a framework for training sequence-level deep learning networks☆403Dec 16, 2024Updated last year
- Inferring multi-modality dynamics for single cell genomics data☆13Dec 18, 2025Updated 6 months ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 7 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆30Oct 3, 2017Updated 8 years ago
- Jupyter notebook based genomic data visualization toolkit.☆257Jun 8, 2026Updated 3 weeks ago
- ☆17Apr 9, 2021Updated 5 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Feb 8, 2021Updated 5 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- Python implementation of the Slingshot pseudotime algorithm☆76Oct 28, 2025Updated 8 months ago
- Biological sequence visualization functions in R☆13May 28, 2026Updated last month
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Feb 12, 2018Updated 8 years ago