pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
☆84Oct 22, 2019Updated 6 years ago
Alternatives and similar repositories for pysster
Users that are interested in pysster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10May 16, 2020Updated 6 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Jul 19, 2018Updated 8 years ago
- ☆53Jul 23, 2020Updated 6 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 7 years ago
- Deep learning for gene expression inference☆149Feb 18, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Mar 21, 2024Updated 2 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆76Jan 7, 2022Updated 4 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated 2 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- Kipoi's model zoo API☆243Dec 17, 2025Updated 9 months ago
- Deep learning infrastructure for genomics☆258Sep 29, 2021Updated 5 years ago
- Applied Statistics for High-Throughput Biology☆16Jul 16, 2026Updated 2 months ago
- Model zoo for genomics☆175Dec 17, 2025Updated 9 months ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for building computational models of gene regulation with tensorflow☆28May 3, 2023Updated 3 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 3 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 8 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Feb 10, 2023Updated 3 years ago
- A list of deep learning implementations in biology☆2,160Sep 12, 2026Updated last month
- predicting expression effects of human genome variants ab initio from sequence☆138Jan 28, 2025Updated last year
- A python library for creating simulated regulatory DNA sequences☆40Feb 22, 2023Updated 3 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆30Oct 3, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a framework for training sequence-level deep learning networks☆400Dec 16, 2024Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 3 years ago
- Inferring multi-modality dynamics for single cell genomics data☆15Dec 18, 2025Updated 9 months ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 8 years ago
- Jupyter notebook based genomic data visualization toolkit.☆261Sep 22, 2026Updated 3 weeks ago
- ☆16Apr 9, 2021Updated 5 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Feb 8, 2021Updated 5 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- Biological sequence visualization functions in R