budach / pysster
pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
☆86Updated 5 years ago
Alternatives and similar repositories for pysster:
Users that are interested in pysster are comparing it to the libraries listed below
- Model zoo for genomics☆166Updated 8 months ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 7 months ago
- TF MOtif Discovery from Importance SCOres☆135Updated last year
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆20Updated 5 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆29Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆111Updated last year
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆74Updated 3 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆32Updated 5 years ago
- Deep learning for gene expression inference☆146Updated 6 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 6 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- predicting expression effects of human genome variants ab initio from sequence☆127Updated 2 months ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 5 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆88Updated 3 months ago
- ☆10Updated 4 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆114Updated 3 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 8 years ago