budach / pysster
pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
☆86Updated 5 years ago
Alternatives and similar repositories for pysster:
Users that are interested in pysster are comparing it to the libraries listed below
- Model zoo for genomics☆166Updated 7 months ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 4 years ago
- TF MOtif Discovery from Importance SCOres☆134Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 6 months ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆111Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆20Updated 5 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 6 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 5 years ago
- Deep learning for gene expression inference☆147Updated 6 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆74Updated 3 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 11 months ago
- ☆23Updated 4 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated 8 months ago
- inferring sequence-structure motifs using deep learning☆37Updated last year
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆117Updated 3 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 8 years ago
- ☆55Updated 4 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago