pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
☆85Oct 22, 2019Updated 6 years ago
Alternatives and similar repositories for pysster
Users that are interested in pysster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10May 16, 2020Updated 6 years ago
- A mini-framework to build and train neural networks for molecular biology.☆10Mar 23, 2018Updated 8 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Jul 19, 2018Updated 8 years ago
- ☆52Jul 23, 2020Updated 6 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Simple and efficient access to genomic data for deep learning models.☆43Jan 9, 2020Updated 6 years ago
- Deep learning for gene expression inference☆148Feb 18, 2019Updated 7 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆76Jan 7, 2022Updated 4 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated last year
- Kipoi's model zoo API☆243Dec 17, 2025Updated 7 months ago
- Deep learning infrastructure for genomics☆258Sep 29, 2021Updated 4 years ago
- Applied Statistics for High-Throughput Biology☆16Jul 16, 2026Updated 3 weeks ago
- Model zoo for genomics☆175Dec 17, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 3 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 8 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Feb 10, 2023Updated 3 years ago
- A list of deep learning implementations in biology☆2,155Aug 3, 2026Updated last week
- predicting expression effects of human genome variants ab initio from sequence☆138Jan 28, 2025Updated last year
- A python library for creating simulated regulatory DNA sequences☆40Feb 22, 2023Updated 3 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆30Oct 3, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a framework for training sequence-level deep learning networks☆403Dec 16, 2024Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- Inferring multi-modality dynamics for single cell genomics data☆14Dec 18, 2025Updated 7 months ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 8 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Feb 8, 2021Updated 5 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- Biological sequence visualization functions in R☆13May 28, 2026Updated 2 months ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated 2 years ago
- Python implementation of the Slingshot pseudotime algorithm☆77Oct 28, 2025Updated 9 months ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago