ucdavis-bioinformatics-training / 2020-Advanced_Single_Cell_RNA_SeqLinks
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
☆15Updated 2 years ago
Alternatives and similar repositories for 2020-Advanced_Single_Cell_RNA_Seq
Users that are interested in 2020-Advanced_Single_Cell_RNA_Seq are comparing it to the libraries listed below
Sorting:
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 2 years ago
- Toolbox with R scripts☆38Updated 7 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Normalize CITEseq Data☆66Updated 6 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 7 months ago
- ☆55Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆28Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆10Updated 7 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Updated 7 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 6 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Toolkit for Single-Cell Velocity☆59Updated 3 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆64Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- R package of colors for the Buenrostro Lab☆84Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆60Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 10 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago