Alternatives and similar repositories for 2020-Advanced_Single_Cell_RNA_Seq

Users that are interested in 2020-Advanced_Single_Cell_RNA_Seq are comparing it to the libraries listed below

• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆40Updated 2 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆42Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆64Updated 4 years ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆61Updated 3 weeks ago
• caleblareau / BuenColors
  R package of colors for the Buenrostro Lab
  ☆84Updated last year
• gatelabNW / csf_aging
  Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
  ☆28Updated 2 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆56Updated 2 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 4 months ago
• romanhaa / cerebroApp
  R package containing the Cerebro application.
  ☆40Updated 3 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆78Updated 3 months ago
• Teichlab / innate_evo
  ☆10Updated 7 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆61Updated 5 years ago
• rpolicastro / scProportionTest
  ☆71Updated 2 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 5 months ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆43Updated last year
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆35Updated 2 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆59Updated 2 months ago
• vertesy / Seurat.utils
  Various utility functions for Seurat single-cell analysis
  ☆53Updated this week
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆61Updated last year
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆15Updated 5 months ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆43Updated 5 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago