ucdavis-bioinformatics-training / 2020-Advanced_Single_Cell_RNA_SeqView external linksLinks
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
☆15Apr 12, 2023Updated 2 years ago
Alternatives and similar repositories for 2020-Advanced_Single_Cell_RNA_Seq
Users that are interested in 2020-Advanced_Single_Cell_RNA_Seq are comparing it to the libraries listed below
Sorting:
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Jun 15, 2018Updated 7 years ago
- Circular RNA Identification for Nanopore Sequencing☆22May 23, 2024Updated last year
- R code for single-cell analysis of intestinal epithelial cells☆23Nov 18, 2017Updated 8 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Mar 3, 2020Updated 5 years ago
- ☆26Dec 25, 2023Updated 2 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- ☆14Jul 1, 2025Updated 7 months ago
- ☆13May 3, 2024Updated last year
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆10Feb 10, 2024Updated 2 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated 8 months ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Sep 17, 2025Updated 4 months ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- R package for Bioconductor submission☆38Dec 8, 2022Updated 3 years ago
- Basics of the OSCA book☆14Sep 29, 2025Updated 4 months ago
- ☆10Oct 24, 2024Updated last year
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Use batch balanced KNN (BBKNN) in R☆13Sep 9, 2025Updated 5 months ago
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆13Apr 2, 2014Updated 11 years ago
- pygor3 repository☆10Nov 20, 2025Updated 2 months ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆12Oct 26, 2025Updated 3 months ago
- R package for analysis of single-cell data using graphs☆10Jun 8, 2023Updated 2 years ago
- Advanced R 1-day course taught at the University of Cambridge☆11Jul 6, 2018Updated 7 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 6 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- R tools for Agilent electrophoresis data☆47Jul 21, 2023Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Sep 18, 2025Updated 4 months ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Mar 10, 2022Updated 3 years ago
- ☆11Jun 15, 2021Updated 4 years ago
- Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.☆12May 3, 2023Updated 2 years ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.☆13May 31, 2021Updated 4 years ago
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- ☆11Apr 26, 2021Updated 4 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆10Oct 5, 2021Updated 4 years ago
- Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit☆13Oct 3, 2025Updated 4 months ago