ucdavis-bioinformatics-training / 2020-Advanced_Single_Cell_RNA_Seq
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
☆14Updated last year
Alternatives and similar repositories for 2020-Advanced_Single_Cell_RNA_Seq:
Users that are interested in 2020-Advanced_Single_Cell_RNA_Seq are comparing it to the libraries listed below
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Toolbox with R scripts☆38Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- A pipeline for scRNA-seq data analysis☆12Updated last month
- An r package that works as a wrapper to homologene☆43Updated last year
- Various utility functions for Seurat single-cell analysis☆46Updated 3 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- ☆53Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Toolkit for Single-Cell Velocity☆55Updated 2 months ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆27Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆15Updated 4 months ago
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆28Updated last year
- Enrichment Networks for Pathway Enrichment Analysis☆44Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 2 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 weeks ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- Cell type pipes for R☆51Updated last year
- ☆10Updated 6 years ago
- ☆10Updated 8 months ago
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year