hmgene / mudcookiesLinks
We help each other to study single-cell data
☆16Updated 8 months ago
Alternatives and similar repositories for mudcookies
Users that are interested in mudcookies are comparing it to the libraries listed below
Sorting:
- Microbial analysis in TCGA data☆91Updated last year
- Basic workflow for ATAC-seq analysis☆86Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆53Updated 7 months ago
- Analysis pipeline for ATAC-seq data☆76Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆141Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 8 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆32Updated 4 years ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆73Updated 3 weeks ago
- A continually expanding collection of cancer genomics notes and data☆108Updated 2 months ago
- ☆63Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆150Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆153Updated last year
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- CUT&RUN and CUT&Tag data processing and analysis☆111Updated 6 months ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆78Updated 8 months ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆76Updated 2 weeks ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆112Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆167Updated 4 months ago
- ☆118Updated 2 years ago
- ☆94Updated 4 months ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆74Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 3 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆100Updated last week
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago