A pipeline for droplet-based single-cell RNA-seq and spot-based spatial transcriptomics data secondary analysis implemented in the drake Make-like pipeline toolkit for the R language.
☆17Aug 27, 2025Updated 11 months ago
Alternatives and similar repositories for scdrake
Users that are interested in scdrake are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆83Jan 23, 2025Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆27Mar 7, 2024Updated 2 years ago
- Scripts to help get fastqs☆19May 13, 2026Updated 3 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Jun 13, 2024Updated 2 years ago
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.☆16Jun 26, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory …☆15Apr 12, 2023Updated 3 years ago
- A single-cell RNA-seq pipeline☆28Apr 12, 2023Updated 3 years ago
- ☆11May 14, 2025Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Jul 29, 2026Updated 2 weeks ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 8 months ago
- collections of tools for cytometry data analysis☆14Jul 9, 2020Updated 6 years ago
- The Singularity Community Catalog of Singularity* recipe files.☆11Oct 27, 2025Updated 9 months ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.☆17Apr 9, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CUDA implementation of RTXX algorithm for multiplication of matrix and its transpose X^T X☆19Jun 9, 2025Updated last year
- Image converter from multiple formats to PDF - useful script for scientific writing e.g. in LaTeX