Alternatives and similar repositories for scdrake:

Users that are interested in scdrake are comparing it to the libraries listed below

• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 2 months ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆53Updated 2 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• KChen-lab / METAFlux
  ☆61Updated 9 months ago
• liulab-dfci / RIMA_pipeline
  ☆79Updated last year
• gexijin / idepGolem
  ☆38Updated last month
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated 10 months ago
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated last month
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆101Updated 2 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated this week
• cnio-bu / bollito
  A single-cell RNA-seq pipeline
  ☆22Updated 2 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆29Updated 3 weeks ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆28Updated 4 years ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆69Updated this week
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆77Updated 7 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• NBISweden / single-cell_sib_scilifelab_2021
  SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
  ☆23Updated 3 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 3 months ago
• nf-core / scdownstream
  A single cell transcriptomics pipeline for QC, integration and making the data presentable
  ☆54Updated this week
• morris-lab / BiddyetalWorkflow
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆32Updated 9 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 3 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆84Updated 9 months ago
• ZilongZhang44 / single-cell-downstream-analysis
  Critical downstream analysis steps for single-cell RNA sequencing data
  ☆13Updated 4 years ago
• naef-lab / dryR
  Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a ti…
  ☆14Updated last year
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆55Updated 5 months ago
• BIMSBbioinfo / VoltRon
  Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
  ☆96Updated 3 weeks ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆40Updated 2 months ago