Alternatives and similar repositories for scdrake

Users that are interested in scdrake are comparing it to the libraries listed below

• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 4 months ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆56Updated 4 months ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated last year
• liulab-dfci / RIMA_pipeline
  ☆81Updated last year
• KChen-lab / METAFlux
  ☆66Updated last year
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated last month
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated last week
• gexijin / idepGolem
  ☆39Updated 2 weeks ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆25Updated 7 months ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆62Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆106Updated 2 years ago
• naef-lab / dryR
  Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a ti…
  ☆14Updated last week
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆73Updated last month
• NBISweden / single-cell_sib_scilifelab_2021
  SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
  ☆23Updated 3 years ago
• neurorestore / DE-analysis
  ☆39Updated 3 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• hukai916 / scATACpipe
  ☆27Updated 8 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated this week
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆28Updated last month
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆62Updated 3 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆112Updated 2 months ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆88Updated last year
• crazyhottommy / immunotherapy_scRNAseq_papers
  ☆14Updated last year
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆83Updated last year
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆81Updated 10 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆79Updated 6 months ago