lpantano / seqbusterLinks
pipeline for the analysis of small RNA data
☆14Updated 6 years ago
Alternatives and similar repositories for seqbuster
Users that are interested in seqbuster are comparing it to the libraries listed below
Sorting:
- small RNA analysis from NGS data☆38Updated last year
- RNA-Seq Mutation Detection☆28Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- My bioinfo toolbox☆50Updated last year
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Updated 3 months ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 9 months ago
- Characterization of Germline variants☆100Updated 3 years ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 10 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- Multi-sample somatic variant caller☆52Updated 4 years ago
- Interactive multiscale visualization for structural variation in human genomes☆71Updated last week
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- ☆44Updated 7 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 5 years ago
- ☆60Updated 6 months ago
- ☆51Updated 6 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.