Alternatives and similar repositories for harissa

Users that are interested in harissa are comparing it to the libraries listed below

• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• maclean-lab / RVAgene
  Recurrent Variational Auto gene encoder
  ☆20Updated 2 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆75Updated last month
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆20Updated last month
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• praneet1988 / Inferring-and-Visualizing-RNA-Velocity-in-Bulk-RNA-SEQ
  Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.
  ☆16Updated 5 years ago
• Tchanders / NetworkInference.jl
  Methods for inferring undirected networks from data
  ☆45Updated 4 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated last year
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• vahuynh / dynGENIE3
  Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
  ☆26Updated 4 months ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆78Updated 6 months ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆59Updated 3 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆73Updated 3 years ago
• cbg-ethz / dce
  Finding the causality in biological pathways
  ☆13Updated 2 years ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆50Updated 4 months ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last month
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆90Updated last year
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• bioFAM / slalom
  ☆29Updated 2 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆24Updated 10 months ago
• FertigLab / CoGAPS
  Bayesian MCMC matrix factorization algorithm
  ☆70Updated last month
• jessica1338 / CSHMM-for-time-series-scRNA-Seq
  This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data
  ☆22Updated 7 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated last month
• dissatisfaction-ai / scHierarchy
  A toolking for cell type hierarchies: marker selection & consistent classification
  ☆22Updated last year
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• anna-neufeld / countsplit
  ☆21Updated 2 years ago
• cbg-ethz / SCATrEx
  Map single-cell transcriptomes to copy number evolutionary trees.
  ☆14Updated last year