Simulation and inference of gene regulatory networks based on transcriptional bursting
☆12Oct 26, 2025Updated 4 months ago
Alternatives and similar repositories for harissa
Users that are interested in harissa are comparing it to the libraries listed below
Sorting:
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆13Aug 13, 2025Updated 6 months ago
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆16Feb 23, 2026Updated last week
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆28Jun 23, 2025Updated 8 months ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- My computational biology course as it evolves in real time☆14Aug 31, 2021Updated 4 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated 9 months ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Bayesian No-Effect-Concentration estimation in R☆14Dec 19, 2025Updated 2 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆80Dec 4, 2025Updated 3 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Dec 12, 2024Updated last year
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 7 months ago
- pygor3 repository☆10Nov 20, 2025Updated 3 months ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 3 months ago
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 4 years ago
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆10Oct 7, 2024Updated last year
- Shiny App for Load Balancing☆13Aug 4, 2014Updated 11 years ago
- Book on Dynamical Systems Approaches to Infectious Disease Epidemiology☆10Nov 30, 2021Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 3 years ago
- A Python module to manipulate and simplify grid diagrams☆12Feb 6, 2025Updated last year
- R package for simulation of caffeine concentration <doi:10.12793/tcp.2017.25.3.141>. https://asancpt.github.io/caffsim☆10Aug 26, 2020Updated 5 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- A python implementation of discrete optimal transport with a Tsallis entropy regularization.☆14Oct 23, 2023Updated 2 years ago
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- Principal Geodesic Analysis in the Wasserstein space☆10Jun 19, 2018Updated 7 years ago
- A custom git utility for managing file sizes in your git workflow.☆11Jan 17, 2022Updated 4 years ago
- SON-EM - Algorithm for parameter estimation of hybrid time-varying parameter systems using Sum of Norms regularization and Expectation Ma…☆10Mar 8, 2018Updated 7 years ago
- Code to accompany my blog post "Dissecting the Hype With Cheminformatics"☆12Sep 22, 2019Updated 6 years ago
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 2 years ago
- Write great documents with markdown, then execute in the shell.☆10Sep 1, 2017Updated 8 years ago
- Sample code demonstrating writing a router for django multi-db support☆19Aug 13, 2012Updated 13 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 7 months ago
- https://jimhester.github.io/r-actions-test/☆11Nov 19, 2021Updated 4 years ago
- Automated testing - Preventing yourself and others from breaking your functioning code☆12Updated this week
- Clustering and resource allocation using Deterministic Annealing Approach and Orthogonal Non-negative Matrix Factorization O-(NMF)☆11Apr 24, 2025Updated 10 months ago
- Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.☆12Mar 17, 2025Updated 11 months ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year