A pipeline for processing single-cell and spatial long-read transcriptomic data
☆13Oct 28, 2026Updated last week
Alternatives and similar repositories for spl-IsoQuant
Users that are interested in spl-IsoQuant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell Alternative Polyadenylation using Expectation-maximization☆11Mar 15, 2024Updated 2 years ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated last year
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆26Updated this week
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆17Sep 7, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆33Jan 29, 2026Updated 9 months ago
- Isoform Identification and Quantification via Long Read RNA-Seq☆17Updated this week
- ☆16Jun 8, 2023Updated 3 years ago
- ☆54Aug 1, 2024Updated 2 years ago
- ☆10Oct 8, 2025Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆43Jan 14, 2025Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- ☆10May 31, 2022Updated 4 years ago
- A pipeline for Nanopore single cell isoform quantification in R☆14Oct 19, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- polyApipe☆25Feb 10, 2025Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆57Oct 26, 2026Updated last week
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Oct 16, 2026Updated 3 weeks ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 3 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 3 years ago
- long read RNA-seq quantification☆127Oct 24, 2026Updated 2 weeks ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data☆10Jun 3, 2026Updated 5 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Platform-agnostic quantification of technical noise in single-cell RNA-seq. Supports ONT, PacBio/Kinnex, and short-read 10x / BD Rhapsody…☆13Sep 10, 2026Updated last month
- ☆22Aug 2, 2023Updated 3 years ago
- ☆24Feb 22, 2023Updated 3 years ago
- ☆39Aug 6, 2026Updated 3 months ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆69Aug 13, 2026Updated 2 months ago
- ☆24Jul 30, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆21Apr 20, 2026Updated 6 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆16Jan 16, 2024Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆61May 15, 2025Updated last year
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆16Sep 4, 2026Updated 2 months ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago