A pipeline for Nanopore single cell isoform quantification in R
☆14Oct 19, 2026Updated 2 weeks ago
Alternatives and similar repositories for LongcellPre
Users that are interested in LongcellPre are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell isoform heterogeneity and differential alternative splicing analysis☆14Sep 14, 2025Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆26Updated this week
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated last year
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated last year
- SingleCell Nanopore sequencing data analysis☆74May 30, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package to simulate and detect differential transcript usage in transcript-level single-cell datasets.☆11Jun 4, 2025Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆17Apr 4, 2024Updated 2 years ago
- ☆11May 15, 2025Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆43Jan 14, 2025Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆60May 15, 2025Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆26Oct 12, 2026Updated 3 weeks ago
- ☆20Oct 5, 2022Updated 4 years ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers☆12Jan 30, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Repository☆10Oct 23, 2024Updated 2 years ago
- Isoform-level spatial transcriptomics analysis☆19May 3, 2026Updated 6 months ago
- pipeline for working with PacBio long read RNA data using the outputs of isoseq3☆10Oct 27, 2026Updated last week
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 3 years ago
- Isoform Identification and Quantification via Long Read RNA-Seq☆17Updated this week
- ☆20Jan 23, 2026Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Class to view Alphafold models☆11Jan 20, 2023Updated 3 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- End-to-end analysis of Oxford Nanopore single-cell sequencing, from barcode and UMI identification to gene and transcript expression☆122Jan 23, 2026Updated 9 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆69Aug 13, 2026Updated 2 months ago
- polyApipe☆25Feb 10, 2025Updated last year
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆45Mar 9, 2023Updated 3 years ago
- Code for tidymass2 manuscript☆11Dec 15, 2025Updated 10 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jul 31, 2026Updated 3 months ago
- ☆24Jul 30, 2025Updated last year
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆15Oct 5, 2026Updated last month
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆18Nov 30, 2024Updated last year
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Super-fast and accurate demultiplexing of direct RNA-seq runs (Pryszcz*, Diensthuber*, et al., Genome Res 2025)☆21Oct 26, 2026Updated last week