GGFHF / ddRADseqToolsLinks
Software package for in silico simulation and testing of double digest RADseq experiments.
☆19Updated 5 years ago
Alternatives and similar repositories for ddRADseqTools
Users that are interested in ddRADseqTools are comparing it to the libraries listed below
Sorting:
- ☆27Updated 11 months ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- ☆29Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Genome-wide de novo genotyping with 2bRAD☆23Updated 8 months ago
- Methods for examining PCA locally along the genome.☆88Updated last year
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated 2 years ago
- Population genetics analyses from NGS data☆26Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆50Updated 2 weeks ago
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated last month
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Updated 3 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆39Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last week
- Conditional Reciprocal Best Blast☆43Updated 8 years ago
- ☆23Updated 7 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Updated 7 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Genome Annotation Without Nightmares☆46Updated last week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated last year
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago