Software package for in silico simulation and testing of double digest RADseq experiments.
☆19Sep 24, 2020Updated 5 years ago
Alternatives and similar repositories for ddRADseqTools
Users that are interested in ddRADseqTools are comparing it to the libraries listed below
Sorting:
- ☆19Jan 24, 2018Updated 8 years ago
- Population assignment analysis using R☆15Jul 4, 2025Updated 8 months ago
- Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individua…☆10Feb 21, 2018Updated 8 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- Here is the material for a workshop series about biostatistics in R. Topics will include data management, a lot of (generalized) linear (…☆11Feb 21, 2019Updated 7 years ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆19Aug 26, 2019Updated 6 years ago
- common bioinformatic scripts☆17Apr 28, 2021Updated 4 years ago
- Unified repository for the GA4GH Beacon v2 API standard☆33Updated this week
- Fast gradient-based optimization of resistance surfaces☆15Jul 9, 2020Updated 5 years ago
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- ☆15Jan 10, 2023Updated 3 years ago
- ☆15Nov 11, 2019Updated 6 years ago
- a bash pipeline for RAD sequencing☆55Jan 27, 2025Updated last year
- A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python…☆16Apr 17, 2025Updated 11 months ago
- Assembly and analysis of RADseq data sets☆27Aug 22, 2016Updated 9 years ago
- ☆10Jul 1, 2020Updated 5 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- ☆10Jul 29, 2020Updated 5 years ago
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 2 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Utilities for Samtools ( http://samtools.sourceforge.net/ )☆18Sep 26, 2011Updated 14 years ago
- ☆38Apr 8, 2022Updated 3 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 8 years ago
- Topology weighting from unphased genotypes of any ploidy☆23Updated this week
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- GeneMiner2 is an enhanced version of our previous developments Easy353 and GeneMiner☆15Updated this week
- A toolkit for identifying recombination and recombinant genotypes☆25Dec 3, 2025Updated 3 months ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated last year
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 3 months ago
- Tightly packed 1d and 2d bit arrays.☆13Nov 25, 2025Updated 3 months ago
- A collection of useful algorithms and data structures for bioinformatics☆12Jan 4, 2023Updated 3 years ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- R user dicussion group (PE&RC graduate school) -- Wageningen University☆12Jun 2, 2020Updated 5 years ago
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 4 years ago
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆16Jan 20, 2025Updated last year
- A Repository for Polygenic Indexes☆14May 29, 2023Updated 2 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 6 months ago
- script that convert vcf file into genotype data matrix to input DIYABC program.☆12Jul 9, 2015Updated 10 years ago