Alternatives and similar repositories for microhaplot:

Users that are interested in microhaplot are comparing it to the libraries listed below

• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆39Updated 4 months ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 2 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• hemstrow / snpR
  ☆29Updated this week
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated 4 months ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆15Updated 7 months ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆55Updated 6 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆33Updated 8 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 6 months ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆43Updated 5 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated 2 months ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 10 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆36Updated last year
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated 10 months ago
• edgardomortiz / sam2consensus
  Get the consensus sequences from SAM (and BAM) files, ignoring the reference
  ☆10Updated 5 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆56Updated 3 months ago
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆13Updated 2 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆27Updated 3 weeks ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆16Updated this week