microhaplotype visualizer and analyzer
☆20Jun 24, 2021Updated 4 years ago
Alternatives and similar repositories for microhaplot
Users that are interested in microhaplot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 7 months ago
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11May 13, 2026Updated last week
- efficient sampling for close-kin mark recapture power estimation☆15Jun 26, 2025Updated 10 months ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- the hierfstat package☆27Nov 20, 2024Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 5 years ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 4 months ago
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 5 months ago
- Population assignment analysis using R☆15Jul 4, 2025Updated 10 months ago
- Tutorial for performing redundancy analysis☆16Oct 21, 2020Updated 5 years ago
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- RADseq Data Exploration, Manipulation and Visualization using R☆60Sep 4, 2025Updated 8 months ago
- ☆30Oct 14, 2022Updated 3 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- ☆13May 13, 2024Updated 2 years ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 3 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Mar 20, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- method for modeling continuous and discrete population genetic structure☆38May 2, 2026Updated 2 weeks ago
- testing where SNP are in the humain genom☆12Oct 24, 2016Updated 9 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- ☆14Mar 18, 2025Updated last year
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆31Updated this week
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆15May 7, 2026Updated last week
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Transfer coordinates across genomes☆23Apr 23, 2026Updated 3 weeks ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Gene-based test of allele-specific expression without requiring haplotype information☆16Mar 20, 2018Updated 8 years ago
- Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler☆10Nov 8, 2018Updated 7 years ago
- SNP genotyping in polyploids☆16Aug 12, 2020Updated 5 years ago
- TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix…☆24Jun 21, 2023Updated 2 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆174Apr 17, 2026Updated last month
- ☆15Aug 18, 2025Updated 9 months ago
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated last year