Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.
☆14Mar 9, 2026Updated 2 weeks ago
Alternatives and similar repositories for corHMM
Users that are interested in corHMM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 8 years ago
- Calculate distances between phylogenetic trees in R☆35Updated this week
- A birth-death-hybridization based phylogenetic network simulator.☆11Oct 2, 2024Updated last year
- R package for cladistic disparity☆13Feb 5, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R Package to Access Kew Data APIs☆21Jun 30, 2022Updated 3 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- MCMC algorithms to identify linguistic contact zones☆14Mar 18, 2026Updated last week
- A textbook for phylogenetic comparative methods.☆43Sep 20, 2019Updated 6 years ago
- Exploring the Phylogenetic Signal in Continuous Traits☆19Jun 10, 2025Updated 9 months ago
- R2 for correlated data; see https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syy060/5098616☆17Aug 19, 2023Updated 2 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆46Mar 7, 2024Updated 2 years ago
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- ☆12Mar 8, 2024Updated 2 years ago
- mvMORPH: an R package for fitting multivariate evolutionary models to morphometric data☆18Mar 19, 2026Updated last week
- D-PLACE: Database of Places, Language, Culture and Environment (OLD)☆21Mar 1, 2021Updated 5 years ago
- ☆229Feb 25, 2026Updated last month
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 5 years ago
- ☆12Jan 29, 2025Updated last year
- analysis code for "Corrected analyses show that moralizing gods precede complex societies but serious data concerns remain"☆21Feb 2, 2021Updated 5 years ago
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated last year
- UZH BIO392: Bioinformatics of Sequence Variation Course Repository☆13May 12, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Tutorials on phylogenetic and phylogenomic inference☆51May 4, 2025Updated 10 months ago
- Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography Botany 2025.☆14Aug 7, 2025Updated 7 months ago
- UCE Bioinformatics Pipeline☆17Sep 29, 2025Updated 5 months ago
- ☆24Feb 11, 2026Updated last month
- Bioinformatics lecture slides 2014☆11Jun 26, 2016Updated 9 years ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 8 months ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆16Sep 2, 2025Updated 6 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A repo hosting the combined lectures of a course on Fundamentals of Computational Biology☆14Jul 4, 2023Updated 2 years ago
- Compilation of tutorials for RevBayes☆23Aug 20, 2018Updated 7 years ago
- A new algorithm for scaffolding☆10Sep 18, 2018Updated 7 years ago
- Bio++ Core Library☆12Feb 9, 2026Updated last month
- Code for reproducing the paper "Space-Time Continuous PDE Forecasting using Equivariant Neural Fields" (https://arxiv.org/abs/2406.06660)…☆14Nov 18, 2025Updated 4 months ago
- Language family classifications as Newick trees☆12Aug 8, 2024Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago