thej022214 / corHMMLinks
Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.
☆13Updated 3 weeks ago
Alternatives and similar repositories for corHMM
Users that are interested in corHMM are comparing it to the libraries listed below
Sorting:
- Bayesian species delimitation integrating genes and traits☆12Updated 3 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- An R Package to build and simulate coalescent models☆20Updated last year
- A birth-death-hybridization based phylogenetic network simulator.☆11Updated 8 months ago
- ☆26Updated 4 years ago
- Exploring the Phylogenetic Signal in Continuous Traits☆18Updated 2 weeks ago
- This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Provid…☆13Updated 6 years ago
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆20Updated 2 years ago
- Phylogenetic penalized likelihood☆49Updated last month
- Machuruku☆32Updated 5 months ago
- A program for multimodel inference on speciation and trait evolution☆33Updated 7 years ago
- method for modeling continuous and discrete population genetic structure☆35Updated last year
- Species occurrence dot maps in R☆21Updated 3 years ago
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆67Updated 3 months ago
- DPPDIV☆12Updated 5 years ago
- babette is an R package to work with BEAST2☆46Updated 2 weeks ago
- Compilation of tutorials for RevBayes☆22Updated 6 years ago
- R package to run BEAST2☆11Updated last month
- A Landscape Genomic Analysis Toolkit in R☆19Updated 3 weeks ago
- Fast and simple simulation-based population genetic inference in R☆27Updated 2 weeks ago
- Python version of PHLAWD☆21Updated 7 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆29Updated last year
- Phylogenetic ANalyses of DiversificAtion☆24Updated 5 months ago
- A textbook for phylogenetic comparative methods.☆44Updated 5 years ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Updated 4 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆16Updated 3 years ago
- the hierfstat package☆25Updated 7 months ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆19Updated 6 years ago
- Reconstruct Ancestral State in Phylogenies☆21Updated last year
- UCE Bioinformatics Pipeline☆16Updated 7 months ago