A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
☆24Jun 2, 2021Updated 5 years ago
Alternatives and similar repositories for homoplasyFinder
Users that are interested in homoplasyFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jun 11, 2024Updated 2 years ago
- ☆20Jun 15, 2024Updated 2 years ago
- POUTINE: a next-generation homoplasy counting method for genome-wide association studies.☆10Mar 9, 2023Updated 3 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- spruceup☆25Aug 15, 2025Updated 11 months ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆254Jul 14, 2026Updated last week
- Evaluating Nanopore-based bacterial variant calling☆23Jul 23, 2025Updated 11 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated last year
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 5 months ago
- ☆22Mar 25, 2014Updated 12 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆70Oct 29, 2020Updated 5 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆124Jun 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Jun 13, 2026Updated last month
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated 10 months ago
- GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with inform…☆29Nov 9, 2017Updated 8 years ago
- Taxonomy-aware DNA sequence processing toolkit☆34Jun 7, 2026Updated last month
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆49Jun 7, 2023Updated 3 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated last month
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Dec 4, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast pairwise transmission inference from single genome and/or metagenomic data☆38Updated this week
- ☆38Apr 14, 2022Updated 4 years ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆71Feb 23, 2026Updated 4 months ago
- Syllabus and materials for bioinformatics lecture + lab☆21Apr 23, 2015Updated 11 years ago
- ☆14Jun 14, 2026Updated last month
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 5 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 10 months ago
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- PoSeiDon: positive selection detection and recombination analysis pipeline☆40Sep 22, 2025Updated 9 months ago
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆26Jul 13, 2018Updated 8 years ago
- Toolkit to convert the output of common variant calling programs to VCF☆23Dec 7, 2022Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- Goalign : a set of command line tools and an API to manipulate multiple sequence alignments.☆90Updated this week
- Scripts for file processing and analysis in phylogenetics and phylogeography☆14Jan 6, 2021Updated 5 years ago