A birth-death-hybridization based phylogenetic network simulator.
☆11Oct 2, 2024Updated last year
Alternatives and similar repositories for SiPhyNetwork
Users that are interested in SiPhyNetwork are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jun 22, 2026Updated 3 months ago
- An R function to compute Concordance Factors from SNP datasets☆16Dec 4, 2025Updated 9 months ago
- Display utilities for phylogenetic trees and networks☆21Aug 2, 2026Updated last month
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Jul 29, 2026Updated last month
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆27Apr 14, 2021Updated 5 years ago
- Presentation at the Joint Statistical Meetings 2021☆12Aug 8, 2021Updated 5 years ago
- ☆13Mar 8, 2024Updated 2 years ago
- Biological Sequence Substitution Models for Julia☆17Apr 23, 2023Updated 3 years ago
- Phylogenetic ANalyses of DiversificAtion (in Julia)☆12Jul 13, 2024Updated 2 years ago
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated 2 years ago
- coevolve R package for Bayesian generalized dynamic phylogenetic models using Stan☆15Sep 15, 2026Updated last week
- phylogenetic networks using ggplot2 and ggtree☆12Jun 11, 2026Updated 3 months ago
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆175Aug 23, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Sketch phylogenetic trees and networks☆26Updated this week
- Python script for creating and analyzing simulated bpp datasets published in Flouris et al. 2019.☆10May 12, 2019Updated 7 years ago
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆19Aug 5, 2022Updated 4 years ago
- A Julia package for estimating phylogenetic networks from genomic data☆20Jun 3, 2024Updated 2 years ago
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆15Sep 10, 2026Updated last week
- ☆22Jun 11, 2026Updated 3 months ago
- D-PLACE: Database of Places, Language, Culture and Environment (OLD)☆21Mar 1, 2021Updated 5 years ago
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆77Updated this week
- CoalHMM☆23Nov 4, 2013Updated 12 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bayesian species delimitation integrating genes and traits☆11Aug 17, 2021Updated 5 years ago
- Simple phylogenetic trees in Julia to work with Diversity.jl - https://github.com/EcoJulia/Diversity.jl☆37Jul 15, 2026Updated 2 months ago
- ☆12Jul 30, 2022Updated 4 years ago
- Automorphism groups for CSets - generalizing the nauty algorithm to a broad class of data structures☆13Oct 30, 2023Updated 2 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 7 months ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- ☆13Jan 29, 2025Updated last year
- ☆12Aug 13, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 3 years ago
- method for modeling continuous and discrete population genetic structure☆39Aug 27, 2026Updated 3 weeks ago
- Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography Botany 2026.☆16Aug 4, 2026Updated last month
- ☆20Oct 2, 2024Updated last year
- Visualization of the COVID-19 trend with Matplotlib and GeoPandas☆10Feb 28, 2021Updated 5 years ago
- Examples of application of comparative methods in R☆60Oct 3, 2022Updated 3 years ago
- rcldf - The R library for reading CLDF files☆16Sep 7, 2026Updated 2 weeks ago