jasonleebrown / UCE_phyluce_pipelineLinks
UCE Bioinformatics Pipeline
☆16Updated 7 months ago
Alternatives and similar repositories for UCE_phyluce_pipeline
Users that are interested in UCE_phyluce_pipeline are comparing it to the libraries listed below
Sorting:
- ☆31Updated 3 years ago
- Workflow to detect and phase hybrids in target capture data☆19Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 8 months ago
- Repository for speciation genomics website☆25Updated 11 months ago
- ☆18Updated 7 years ago
- ☆40Updated last year
- An R Package to build and simulate coalescent models☆20Updated last year
- ☆13Updated 8 years ago
- Population assignment analysis using R☆17Updated 2 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- Phylogenetic penalized likelihood☆49Updated last month
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆16Updated 3 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Scripts for population genetics analysis☆20Updated 2 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- ☆26Updated 2 years ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- ☆18Updated 4 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆16Updated 4 months ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆54Updated 2 weeks ago
- RADseq workflow using STACKS☆57Updated last week
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- An R function to compute Concordance Factors from SNP datasets☆14Updated 6 months ago
- Fast and simple simulation-based population genetic inference in R☆27Updated 2 weeks ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Updated 5 years ago
- A package for population structure inference from RAD-seq data☆31Updated 4 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago