jimhester / scaterLinks
Single cell analysis tools for expression from RNA-seq in R
☆10Updated 10 years ago
Alternatives and similar repositories for scater
Users that are interested in scater are comparing it to the libraries listed below
Sorting:
- R Package for Single-Cell Dataset Processing and Visualization☆66Updated 4 years ago
- A R package for advanced single cell data viz☆73Updated 5 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Updated this week
- scGSVA: Perform GSVA for single cell RNA seq☆70Updated last week
- Accurate and fast cell marker gene identification with COSG☆62Updated 2 weeks ago
- Create stacked violin plot☆51Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆87Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Updated 9 months ago
- ☆65Updated 6 years ago
- Methods for decontamination of single cell data☆56Updated 11 months ago
- Various utility functions for Seurat v5 single-cell analysis☆62Updated 3 weeks ago
- R package for semi-supervised single-cell data integration☆95Updated 2 weeks ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆82Updated 2 years ago
- ☆57Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆116Updated 9 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆68Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 3 months ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆65Updated last year
- Cell type prioritization in single-cell data☆138Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆31Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆76Updated 3 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Updated last week
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Updated 11 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago