Alternatives and similar repositories for COSG:

Users that are interested in COSG are comparing it to the libraries listed below

• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆43Updated 3 years ago
• Lan-lab / sc-GC
  ☆30Updated 2 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆32Updated 4 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆29Updated 3 years ago
• yqq-chen / CRC_ICB
  ☆28Updated last year
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆39Updated 2 months ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆21Updated 9 months ago
• JackieHanLab / SenCID
  Senescent Cell Identification
  ☆30Updated 11 months ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆39Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆26Updated 10 months ago
• aliceygao / pan-Fibroblast
  ☆34Updated 6 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆56Updated 4 months ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆74Updated last year
• MSZaki / Aging-and-CR-rat-atlas
  Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…
  ☆28Updated 5 years ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆28Updated 2 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• Chuxj / CRC-atlas
  ☆24Updated 8 months ago
• Core-Bioinformatics / MASLD-NASH
  scripts associated with NAFLD-NASH project
  ☆20Updated 8 months ago
• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆38Updated last year
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆20Updated 2 years ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆12Updated 3 years ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆32Updated 7 months ago
• youqiongye / CRC_scRNAseq
  ☆44Updated 3 years ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆71Updated 2 months ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆77Updated last year
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆24Updated last month
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆93Updated last year