genecell / COSGLinks
Accurate and fast cell marker gene identification with COSG
☆46Updated 3 months ago
Alternatives and similar repositories for COSG
Users that are interested in COSG are comparing it to the libraries listed below
Sorting:
- Estimation of Single-Cell Potency with Single Cell Entropy☆41Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- ☆30Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 2 years ago
- ☆46Updated 3 years ago
- Codes for the scPLC project☆67Updated 2 years ago
- Integration of gut cell atlases☆26Updated 5 months ago
- ☆44Updated 11 months ago
- ☆15Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆117Updated 10 months ago
- ☆50Updated last year
- Draw phylogenetic trees of tumor evolution☆80Updated last year
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 2 months ago
- ☆30Updated 4 months ago
- A tool for semi-automatic cell type harmonization and integration☆108Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆56Updated 2 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆64Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated 10 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆74Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- ☆37Updated 2 years ago