Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
☆14Mar 15, 2019Updated 7 years ago
Alternatives and similar repositories for Innovation-IMPACT-Pipeline
Users that are interested in Innovation-IMPACT-Pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- A collection of Fabric utilities largely for Django deployment.☆28Apr 15, 2013Updated 13 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- cfDNA Sequencing Pipeline with UMI☆11Dec 8, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Whole genome workflows☆13Nov 9, 2024Updated last year
- notes and materials from dbug meetings☆10Sep 26, 2018Updated 7 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- ☆11Aug 3, 2018Updated 7 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- ☆27Oct 23, 2025Updated 5 months ago
- Compendium of tools for the Imaging Platform☆15Apr 2, 2026Updated last week
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Mar 9, 2018Updated 8 years ago
- ☆21Dec 26, 2025Updated 3 months ago
- Fast RNAseq pipeline☆10Mar 17, 2023Updated 3 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity☆14Nov 21, 2019Updated 6 years ago
- SV☆15May 3, 2018Updated 7 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 3 months ago
- Home Assistant VNC to Dashboard☆21Jan 29, 2026Updated 2 months ago
- processing illumina SNP arrays☆19Feb 3, 2017Updated 9 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 5 months ago
- From IDAT to beta.☆25Jul 13, 2018Updated 7 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This is a template project for using kitchen for puppet development☆13Dec 6, 2020Updated 5 years ago
- ☆18Dec 9, 2025Updated 4 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Apr 11, 2024Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- FUSE filesystem for Joplin notes☆16Aug 5, 2025Updated 8 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago