faircloth-lab / illumiprocessor
pre-process illumina reads
☆18Updated 2 years ago
Alternatives and similar repositories for illumiprocessor:
Users that are interested in illumiprocessor are comparing it to the libraries listed below
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Code and files used in teaching and training courses.☆31Updated 8 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- A Better Sequencing Simulator for Metagenomics☆20Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆59Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆14Updated last year
- Overlap assembler of paired-end DNA sequences generated by Illumina☆22Updated 8 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- LoFreq Version 3☆27Updated 4 years ago